Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04551 ATGTCCCATACGTCCTCCTGCCTGCAGAAATTTCAGAAGTGTGAATATGCAAAAACGAAGTTATTTAAAACTGAAGGCCGAGGGTGGGGTCTTTTGGCTGATGAGGACATTAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGCAGATCCCATACATATGAAACTCAAGGTCTTACAGATGCATATATCATTTCTCTTAATGCGTCTGAATCCATCGATGCAACTAGAAAGGGAAGCATTGCCAGATTTATTAATCATTCCTGTCAACCAAATTGTGAGACAAGAAAATGGACTGTCATGGGGGAAATAAGAGTTGGAATATTTGCAAGGCAAGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCCCAAATGTTCCGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATAGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACCGATGTCAAATGCTGATGGACAAAGTGAACAATCCATGGATATTATAGTTAAAGTTGAGGAACTATCAGAGTCCACTGCTTTTAATGTTCAACCAGTCGATTCAGTTGAGATCAAGGATTTAGGTGATTCAGTTGAAATCAAGGATTTAAGTATTCAAAAAATTAAAACTGAAATAGTAAGTGAGGACATGAAGTTGTACTCCCAAGATACCGAACACAACCTTCCACAAAAGAATGCAATGATATCGCGCATTCGAAGTAACACTGCAGGACGAAACTATCGCATTGGACCTAGGTCCATCTCTTCCAAAAGATCAAAGGCACAGAATGGGGGAAAGTTTAAAAATCGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTGGCCTTTTGGCATCAAAAGAAGCACAAGATGAGATCTTAGATTATGAGAAAAGAAAAGATGAAGCCACAGAGGCTCTTGATTCTTTATACAACGAAATACGGCCTGCCATTGAAGAACACGAGAGGGATACCCAAGACAGTGTATCTACAACCGTAGCCGAGAAATGGATTCAAGCATGCTGTCTAAAACTGAAGGTGGAGTTCGATCTTTACTCATCAATTGTCAAAAATGTTGCTTGTACTGCTCAAAAGGCACCCGACCAAGCAAAAGCTACCGAAGTAGATATCGAAAACAAAATGAAGCTTTTGACTGATTGA 1275 0.3984 MSHTSSCLQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSHTYETQGLTDAYIISLNASESIDATRKGSIARFINHSCQPNCETRKWTVMGEIRVGIFARQDIPIGTELAYDYNFEWFGGAKVRCLCGAPKCSGFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDEPMSNADGQSEQSMDIIVKVEELSESTAFNVQPVDSVEIKDLGDSVEIKDLSIQKIKTEIVSEDMKLYSQDTEHNLPQKNAMISRIRSNTAGRNYRIGPRSISSKRSKAQNGGKFKNRIQKKIDAKYAAGLLASKEAQDEILDYEKRKDEATEALDSLYNEIRPAIEEHERDTQDSVSTTVAEKWIQACCLKLKVEFDLYSSIVKNVACTAQKAPDQAKATEVDIENKMKLLTD 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04551 424 SMART PostSET_3 141 157 IPR003616 -
Vivi1g04551 424 SMART set_7 17 140 IPR001214 GO:0005515
Vivi1g04551 424 PANTHER SET DOMAIN PROTEINS 9 411 - -
Vivi1g04551 424 Gene3D SET domain 2 169 IPR046341 -
Vivi1g04551 424 ProSiteProfiles SET domain profile. 17 134 IPR001214 GO:0005515
Vivi1g04551 424 SUPERFAMILY SET domain 6 154 IPR046341 -
Vivi1g04551 424 ProSiteProfiles Post-SET domain profile. 141 157 IPR003616 -
Vivi1g04551 424 Pfam SET domain 28 134 IPR001214 GO:0005515
Vivi1g04551 424 Coils Coil 324 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04551 Vivi-Chr1 97336256 97340066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04551 17 156 C2H2 Transcription Factor Family AT2G23740 36.646 9.65e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1g04551 SET 2.7e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04551 1 97336256 97340066 Vivi1g04551 1 97336256 97340066 ECH