Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04550 ATGGATACTCATACTGAAGATTTGCCTCACTACATTAACATAAATCAGAATGACTTTTATATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTGTATGTGAATGCAGGTATAACGAAGATGACCCTTACAGTGCCTGTGCAGATGGGTGCCTAAATGTATTAACCAGCACCGAATGTACTCCTGGTCACTGTCCTTGTGGCATCCTCTGTAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACGAAGTTATTTAAAACTGAAGGCCGAGGGTGGGGTCTTTTGGCTGATGAGGACATTAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGCAGATCCCATACATATGAAACTCAAGGTCTTACAGATGCATATATCATTTCTCTTAATGCGTCTGAATCCATCGATGCAACTAGAAAGGGAAGCATTGCCAGATTTATTAATCATTCCTGTCAACCAAATTGTGAGACAAGAAAATGGACTGTCATGGGGGAAATAAGAGTTGGAATATTTGCAAGGCAAGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCCCAAATGTTCCGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATAGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACCGATGTCAAATGCTGATGGACAAAGTGAACAATCCATGGATATTATAGTTAAAGTTGAGGAACTATCAGAGTCCACTGCTTTTAATGTTCAACCAGTCGATTCAGTTGAGATCAAGGATTTAGGTGATTCAGTTGAAATCAAGGATTTAAGTATTCAAAAAATTAAAACTGAAATAGTAAGTGAGGACATGAAGTTGTACTCCCAAGATACCGAACACAACCTTCCACAAAAGAATGCAATGATATCGCGCATTCGAAGTAACACTGCAGGACGAAACTATCGCATTGGACCTAGGTCCATCTCTTCCAAAAGATCAAAGGCACAGAATGGGGGAAAGTTTAAAAATCGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTGGCCTTTTGGCATCAAAAGAAGCACAAGATGAGATCTTAGATTATGAGAAAAGAAAAGATGAAGCCACAGAGGCTCTTGATTCTTTATACAACGAAATACGGCCTGCCATTGAAGAACACGAGAGGGATACCCAAGACAGTGTATCTACAACCGTAGCCGAGAAATGGATTCAAGCATGCTGTCTAAAACTGAAGGTGGAGTTCGATCTTTACTCATCAATTGTCAAAAATGTTGCTTGTACTGCTCAAAAGGCACCCGACCAAGCAAAAGCTACCGAAGTAGATATCGAAAACAAAATGAAGCTTTTGACTGATTGA 1473 0.3978 MDTHTEDLPHYININQNDFYMRRHKKQKEEDIAVCECRYNEDDPYSACADGCLNVLTSTECTPGHCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSHTYETQGLTDAYIISLNASESIDATRKGSIARFINHSCQPNCETRKWTVMGEIRVGIFARQDIPIGTELAYDYNFEWFGGAKVRCLCGAPKCSGFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDEPMSNADGQSEQSMDIIVKVEELSESTAFNVQPVDSVEIKDLGDSVEIKDLSIQKIKTEIVSEDMKLYSQDTEHNLPQKNAMISRIRSNTAGRNYRIGPRSISSKRSKAQNGGKFKNRIQKKIDAKYAAGLLASKEAQDEILDYEKRKDEATEALDSLYNEIRPAIEEHERDTQDSVSTTVAEKWIQACCLKLKVEFDLYSSIVKNVACTAQKAPDQAKATEVDIENKMKLLTD 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04550 490 Coils Coil 390 417 - -
Vivi1g04550 490 SMART PostSET_3 207 223 IPR003616 -
Vivi1g04550 490 PANTHER SET DOMAIN PROTEINS 7 477 - -
Vivi1g04550 490 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Vivi1g04550 490 Gene3D SET domain 1 235 IPR046341 -
Vivi1g04550 490 FunFam Histone-lysine N-methyltransferase 1 235 - -
Vivi1g04550 490 SMART set_7 83 206 IPR001214 GO:0005515
Vivi1g04550 490 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Vivi1g04550 490 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Vivi1g04550 490 Pfam SET domain 94 200 IPR001214 GO:0005515
Vivi1g04550 490 SUPERFAMILY SET domain 13 220 IPR046341 -
Vivi1g04550 490 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0042054
Vivi1g04550 490 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04550 Vivi-Chr1 97334354 97340066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04550 66 222 C2H2 Transcription Factor Family AT2G23740 35.955 7.49e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1g04550 SET 3.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04550 - - gmx:100804657 804.283