Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04523 ATGTCATTTCGGAGTATTGTTCGTGACGTGAGGGATGGAATTGGAAGTTTATGGAGTCCGCGTTTTGAGGTGAGGCTTCCTGGACATCAGAAGGGGAAGTCGAGGAGTTCGGTCCATGAGTTGCAGGATCAGCCTCCTGTTATACAGAATGGCCTGTGGGCGAGTCTACCGCCGGAGCTTCTTCGTGATGTTATTAAGAGATTGGAATCTAATGAGAGTACTTGGCCTAGCCGGAAACATGTGGTTGCGTGTGCTGCGGTGTGCAAGTCGTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCTGGAGTATTGTGGGAAGATTACTTTCCCGGTTTCACTGAAACAGCCCGGGTATAGAGATGGACCAATCCAGTGTTTCATCAAGAGGGACAAATCTAAGCTGACATACCACCTTTTCCTTTGCCTCAGTCCCGCTTTGCTAGTTGAAAATGGAAAATTTCTTCTCTCTGCTAAACGCACCAGAAGATCGATTTGCAATGAGTATGTTATATCAATGGATGCAGATAACATATCACGATCTAGCAGCACTTACATTGGAAAGCTTAGGTCTAATTTTCTTGGAACCAAGTTCATAATTTACGATACACAGCCTCCATATAACAATGCTGATCAGTTGGCGGCTCCACCTGGACGCAGCAGCCGTAGATTCTACTCAAAAAAAGTTTCTCCAAAGGTCCCTAGTGGCAACTACAACGTCGCACAGGTCACCTATGACTTTAATGTCCTCGGCACCCGAGGTCCACGCACCCAAGGTCCACGAAGGATGAATTGCACTATGTACTCAATCCCTTCATCATCCCTTGAGCCCGGTGGCGTTGTCCCAGGCCAGCCAGAGCTCATTTCTCGCTCACTCGAGGATTCTTTCCATAGCTTATCCTTTGCAAGGTCAATCGATAACTCAACCGAGTTTAGCAGTTGTAGATTCTCGGGCATAATGGGAGCTAGCATAATGGAAGATAGAAATGAAGACGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAATCTTCAGGATGGAACGAACAGCAGCAATGCTGGTGCCTTGACTTTAGGGGACGCGTGACCGTAACGTCCGTCAAGAATTTTCAGCTGATCGCTTCAACACAGCCAGCAGCCGTCCCTCCTTGCGCAGCAACAGGACCTGCGCCGTCGCAGCCGGCTCAGTCTGACGATGACAAGATTATTCTTCAGTTCGGTAAGGTTGGGGAGGACATGTTTACGATGGACTATCGATACCCTCTCTCGGCGTTTCAGGCTTTTGCGATATGCTTGACTAGCTTTGACACAAATATTTATTAG 1326 0.4759 MSFRSIVRDVRDGIGSLWSPRFEVRLPGHQKGKSRSSVHELQDQPPVIQNGLWASLPPELLRDVIKRLESNESTWPSRKHVVACAAVCKSWREMCKEIVSSLEYCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRSICNEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNADQLAAPPGRSSRRFYSKKVSPKVPSGNYNVAQVTYDFNVLGTRGPRTQGPRRMNCTMYSIPSSSLEPGGVVPGQPELISRSLEDSFHSLSFARSIDNSTEFSSCRFSGIMGASIMEDRNEDEEGKERPLVLKNKSSGWNEQQQCWCLDFRGRVTVTSVKNFQLIASTQPAAVPPCAATGPAPSQPAQSDDDKIILQFGKVGEDMFTMDYRYPLSAFQAFAICLTSFDTNIY 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04523 441 PANTHER TUBBY-RELATED 39 439 - -
Vivi1g04523 441 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Vivi1g04523 441 FunFam Tubby-like F-box protein 48 101 - -
Vivi1g04523 441 Pfam F-box domain 53 99 IPR001810 GO:0005515
Vivi1g04523 441 Pfam Tub family 114 438 IPR000007 -
Vivi1g04523 441 Gene3D - 49 102 - -
Vivi1g04523 441 CDD F-box_AtTLP-like 53 97 - -
Vivi1g04523 441 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Vivi1g04523 441 PRINTS Tubby superfamily signature 400 419 IPR000007 -
Vivi1g04523 441 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vivi1g04523 441 PRINTS Tubby superfamily signature 359 375 IPR000007 -
Vivi1g04523 441 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vivi1g04523 441 PRINTS Tubby superfamily signature 341 358 IPR000007 -
Vivi1g04523 441 PRINTS Tubby superfamily signature 421 441 IPR000007 -
Vivi1g04523 441 Gene3D Tubby Protein; Chain A 112 437 IPR025659 -
Vivi1g04523 441 SUPERFAMILY Tubby C-terminal domain-like 103 439 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04523 Vivi-Chr1 96874050 96877904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04523 1 440 TUB Transcription Factor Family AT1G76900 64.114 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi1g04523 Tub 1.9e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04523 K19600 - gmx:100810531 705.671