Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04521 ATGTCGTTTAGGAGTATTGTTCGTGACGTGAGGGATGGGATTGGAAGTTTATCGAGTCGGCGTTTTGAGGTGAGGCTTCCTGGACATCAGAAGGGGAAGTCGAGGAGTTCGGTCCATGAATTGCAGGATCAGCCTCCTGTTATACAGAATAGCCGGTGGGCGAGTTTACCGCCGGAGCTTCTTCGTGATGTTATTAAGAGATTGGAATCTAATGAGAGTACTTGGCCTAGTCGGAAACATGTGGTTGCGTGTGCTGCGGTGTGTAAGTCGTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCTTGAGTATTGTGGGAAGATTACCTTTCCGGTTTCGCTGAAACAGCCTGGGTATAGAGATGGACCAATCCAGTGTTTCATCAAGCGAGACAAATCTAAGCTGACATACCATCTTTTCCTTTGCCTTAGTCCCGCCTTGCTTGTTGAAAATGGAAAATTTCTTCTCTCTGCTAAACGCACCAGAAGAACGACTTGCACTGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCTAGCAGCACTTACATCGGAAAGCTTAGGTCTAATTTTCTTGGAACCAAGTTCATAATTTACGATACACAGCCTCCCTATAACAATGCTCAGTTGGCGGCTCCACCTGGACGCAGCAGCCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCTAGTGGCAACTACAACGTCGCACAGGTAACCTACGAGTTGAATGTCCTCGGCACCAGAGGTCCACGGAGGATGAATTGCACTATGTACTCAATCCCTTCATCATCCCTTGAGCCCGGCGGCGTTGTCCCCGGCCAGCCAGAGCTCATTTCCCGCTCACTCGAGGATTCTTTCCGTAGCTTATCCTTTGCAAGGTCAATCGATAACTCCACCGAGTTTAGCAGCTGTAGATTCTCGGACATAATGGGAGCTAGCATAATGGAAGATAGAAATGAAGACGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAATCTCCGAGATGGCACGAACAGCTGCAATGCTGGTGCCTTAACTTTAGGGGACGCGTGACCGTAGCGTCCGTCAAGAATTTTCAGCTGATCGCTTCAACACAGCCTGCAGCCATCCCTCCTCGTGCAGCAACAGGACCTGCGCCGTCGCAGCCGGCTCAGTCTGACCATGACAAGATTATTCTTCAGTTCGGTAAGGTCGGCGAGGACATGTTTACCATGGACTATCGATACCCTCTCTCGGCGTTTCAGGCTTTTGCGATATGCTTGACTAGCTTTGACACAAAACTGGCATGTGAATAG 1314 0.4817 MSFRSIVRDVRDGIGSLSSRRFEVRLPGHQKGKSRSSVHELQDQPPVIQNSRWASLPPELLRDVIKRLESNESTWPSRKHVVACAAVCKSWREMCKEIVSSLEYCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAAPPGRSSRRFYSKKVSPKVPSGNYNVAQVTYELNVLGTRGPRRMNCTMYSIPSSSLEPGGVVPGQPELISRSLEDSFRSLSFARSIDNSTEFSSCRFSDIMGASIMEDRNEDEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPAAIPPRAATGPAPSQPAQSDHDKIILQFGKVGEDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04521 437 Gene3D Tubby Protein; Chain A 112 431 IPR025659 -
Vivi1g04521 437 SUPERFAMILY Tubby C-terminal domain-like 103 437 IPR025659 -
Vivi1g04521 437 FunFam Tubby-like F-box protein 110 437 - -
Vivi1g04521 437 PANTHER TUBBY-RELATED 37 435 - -
Vivi1g04521 437 ProSitePatterns Tub family signature 2. 422 437 IPR018066 -
Vivi1g04521 437 ProSitePatterns Tub family signature 1. 353 366 IPR018066 -
Vivi1g04521 437 Pfam Tub family 114 432 IPR000007 -
Vivi1g04521 437 Gene3D - 48 102 - -
Vivi1g04521 437 FunFam Tubby-like F-box protein 48 101 - -
Vivi1g04521 437 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Vivi1g04521 437 CDD F-box_AtTLP-like 53 97 - -
Vivi1g04521 437 PRINTS Tubby superfamily signature 353 369 IPR000007 -
Vivi1g04521 437 PRINTS Tubby superfamily signature 394 413 IPR000007 -
Vivi1g04521 437 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vivi1g04521 437 PRINTS Tubby superfamily signature 335 352 IPR000007 -
Vivi1g04521 437 PRINTS Tubby superfamily signature 415 437 IPR000007 -
Vivi1g04521 437 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vivi1g04521 437 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Vivi1g04521 437 Pfam F-box domain 53 99 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04521 Vivi-Chr1 96856666 96859475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04521 1 437 TUB Transcription Factor Family AT1G76900 69.231 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi1g04521 Tub 9.9e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04521 K19600 - gmx:100810531 765.377