Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04518 ATGGATATTTCCTCCGGTGAGAATATCGTGCCGCCGTCGTCGGTGAACGGCGGTGGTGAGGATGATGATAAGATGAATATGAATATGAACGGTGGTGGTGGAGGAAATAGGTGGCCCCGCCAAGAAACATTGGCTCTCTTGAAGATAAGATCAGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTTCAAGGAAACTAGGTGAACTTGGTTATCATAGAAGCTCAAAAAAGTGCAAAGAGAAATTTGAGAATGTATACAAGTACCATAAAAGAACCAAAGAAGGTAGAAGTGGAAAATCAGAAGGAAAAACATATAGATTTTTTGATGAGTTACAAGCACTTGAGAAAAAAATCACATTCTCTTCTACTTACCCTCCAAAACCACTTCCAAATAATACCACACTCTCATTACCACCAACAATATTGCCTAATGAAGCCACAAAAACAATATCACATGTTACCAATATTACTATTCCATCCACAAACCCTACCACACTTATTTCTCCTTCGCAACCACCGCCAACGCCACCACCGAAAACAACCAATGCAACAACCACGACCAACCCTAGCGCCAACAACAATGTTTCATATTCTTTACCGAATATGAACGTGAACCTATTCTCAACCACGACTACCTCAACTTCTTCTTCCACGGCTTCTGACGAAGACTTGGAAGAGAAGTATCGGAAGAAGAGAAAATGGAAAGACTATTTCAGGAGACTCACAAGAGAAGTGCTTGCGAAACAAGAGGACATGCAAAAGAGATTCTTGGAAGCCATAGACAAGCGCGAAAAGGAACACATGGCTCAACAAGATGCTTTGAGAGTTCAAGAAATGGCTAGAATCAATAAAGAGCATGAACTTCTTGTCCAAGAAAGATCAACAGCCGCTCAAAAGAACGCCGCGGTTATTGCTTTTCTCCAGAAATTGTCCGGACAACCACCACCACAACAACAACCACAACCACCACCACCACCACCAGCGTCAGAACTCTCTCCAACTCCGGTATCACAAATACAAACACAACAACTAATGATACCAAACAACAACATTGTTGAGATTCAGAATATGAATAATGGTCACAAAAGTGCTTGTGATGTTGCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTCCATGCTCTAATAAGGATAAGAACAAGTCTAGAACCAAAGTATCAAGAAAATGGTCCAAAAGCACCATTGTGGGAAGACATCTCAGCTGGAATGAAGAGACTTGGTTACAATAGGAATGCAAAAAGATGCAAAGAAAAGTGGGAGAATATCAACAAGTACTACAAAAAAATGAAAGAAAGTAACAAGCAAAGGCGCGACGATAGTAAAACTTGTCCTTATTTTAACGAACTCGAAGCTCTTTACAAAGAAAAGAACAAGTTACAGAACCCTTTTGGTTCTAACTCGTTTCATAGCATGAAGTCAAGTGAAATGATGGAGCCATTGATGGTGCAACCTGAACAACAATGGAGACCTCCAACTCAATATGAAGAAGGTCATGAGGTGAAGAAGAATAACAACAACGAAGAAAAGCAAGATGATAACGGCGATGTTGACGATGAAGAAGATGATAACATGGATGACTATGAAGACGGAGATAGCATGGAAGAAGATGAAGGAGGTGTTAGCAGCCGTTATGAAGTTGTAACAAATAAACTTCCATCAATGAACACATGA 1713 0.4051 MDISSGENIVPPSSVNGGGEDDDKMNMNMNGGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLGELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDELQALEKKITFSSTYPPKPLPNNTTLSLPPTILPNEATKTISHVTNITIPSTNPTTLISPSQPPPTPPPKTTNATTTTNPSANNNVSYSLPNMNVNLFSTTTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTREVLAKQEDMQKRFLEAIDKREKEHMAQQDALRVQEMARINKEHELLVQERSTAAQKNAAVIAFLQKLSGQPPPQQQPQPPPPPPASELSPTPVSQIQTQQLMIPNNNIVEIQNMNNGHKSACDVASPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAGMKRLGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFNELEALYKEKNKLQNPFGSNSFHSMKSSEMMEPLMVQPEQQWRPPTQYEEGHEVKKNNNNEEKQDDNGDVDDEEDDNMDDYEDGDSMEEDEGGVSSRYEVVTNKLPSMNT 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04518 570 Gene3D - 38 99 - -
Vivi1g04518 570 Gene3D - 381 442 - -
Vivi1g04518 570 FunFam Trihelix transcription factor GT-2 381 442 - -
Vivi1g04518 570 ProSiteProfiles Myb-like domain profile. 36 94 IPR001005 -
Vivi1g04518 570 MobiDBLite consensus disorder prediction 174 188 - -
Vivi1g04518 570 PANTHER FI21293P1 17 525 - -
Vivi1g04518 570 FunFam Trihelix transcription factor GT-2 38 99 - -
Vivi1g04518 570 MobiDBLite consensus disorder prediction 525 549 - -
Vivi1g04518 570 CDD GT1 379 444 - -
Vivi1g04518 570 Pfam Myb/SANT-like DNA-binding domain 379 466 IPR044822 -
Vivi1g04518 570 Pfam Myb/SANT-like DNA-binding domain 36 122 IPR044822 -
Vivi1g04518 570 MobiDBLite consensus disorder prediction 1 39 - -
Vivi1g04518 570 MobiDBLite consensus disorder prediction 319 347 - -
Vivi1g04518 570 MobiDBLite consensus disorder prediction 506 524 - -
Vivi1g04518 570 MobiDBLite consensus disorder prediction 167 200 - -
Vivi1g04518 570 ProSiteProfiles Myb-like domain profile. 379 437 IPR001005 -
Vivi1g04518 570 CDD GT1 37 101 - -
Vivi1g04518 570 SMART sant 377 439 IPR001005 -
Vivi1g04518 570 SMART sant 34 96 IPR001005 -
Vivi1g04518 570 MobiDBLite consensus disorder prediction 500 570 - -
Vivi1g04518 570 MobiDBLite consensus disorder prediction 323 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04518 Vivi-Chr1 96698007 96700893 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04518 31 501 Trihelix Transcription Factor Family AT1G76890 50.302 1.05e-142 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi1g04518 Myb_DNA-bind_4 5.1e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04518 - - gsj:114370603 619.772