Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04515 ATGCTGGGTGACCACTCACCTCTTCTGGGTGGCGGTGGAGACACATCAACACCCAACATGACGGCGGAAGGTGGTGCTGGTGGCGGAGTTGGATCAAATTCTGAAAGTGATATTGAAAGAAGTAGAATTGAAGAAGGTGAACGTAGCTTCGGCGGTAACCGGTGGCCGCGGCCGGAAACTTTGGCGCTTTTAAGGATACGATCCGATATGGATACTGTTTTTCGAGATGCAAGTGTTAAAGGTCCTCTGTGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTTTCACAGAAGTGCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTATAAGTACCATAAGAGAACTAAAGATGGTAGAGGTGGAAAATCAGATGGTAAAACTTATAGATTTTTTGATCAATTAGAAGCCCTTGATCATTTTCATAACCACCCTTCAGCTTATCAACAACAACAATATCAGCCACAAAACCAATCAAAATCACCACAAATTTCAGCATCAATGTCAACACCAACACCGACACCGACACCGTCGCAAGTTGTTACAACTGGGATAACAGAATCAACAACAACAGTGCCAATGTCATTGCCACCAGTGGTTAATACAACCGTTAGTATCCCTCATCATGTAACTGTTTCATCAATTTCAATGCCTCAAAACAATGTTGTAACAACCCAAACCCAAACAATGAATATGAACCAAATAGTTTCTTCCATTAATCCTTCAACTAGTTTCCAACCACCAACAACAAACCCTATCACCACCATTCCTCTTCCATCTTTTCCTAACATTTCTCCAGATCTGCTATCCAATTCCATGGCGAGCTCTTACTCGACTTCTTCAGAAGACACAACGGAAGAAGGATCGCGAAAGAGGAAGCGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTGAGAAGCAAGAGGATTTGCAGAAGAGATTCTTGGAAGCCATTGAGAAACGGGAACAAGAAAAAGTGGCAAGAGAAGAAGCGTGGAGAGCACAAGAGATGCTAAGAATCACTAGAGAGAGAGAAATTCTTGCACAAGAGAGATCTATAGCTGCAGCAAAAGATGCTGCAGTTATGTCTTTCTTGCAGAAAATTGCAGAACAGCAAAATCTAGGAGAAACATTAAGTAACATCAACATTGCTCAACCACCTCCACCACAACAACCACAAAGAAATGCAACACCAACACCACCACCAGTTCCTGCACCAGCTCCAACTCCAACAGCAGCACCCGCACCAACATCAGCACCAGCTCCAACTCCAACAGCCGCACCAGCACCAACATCAGCACCAGCATCAACATTAGCAGTACAAGTGCATGCACCACCGCCATTGCAACCACCGTCTGTTACAAAGCCGAGCCAACCAATTGTCCCACAGCAGCAATTGGTTATGAATAGGGAGATAGTAAGGTTTGATAATAACGGTGAGAATTTCATGGGAGCAAGTCCGTCGAGGTGGCCGAAAGTGGAAGTTGAAGCACTGATAAATCTGAGAACAAGCATGGACAACAAGTATCAAGAGAATGGACCAAAAGGCCCTCTATGGGAGGATATATCTTCAGCAATGAGAAACCTTGGGTACAATAGGAATGCCAAAAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAAAAAGTGAAAGAAAGTAACAAGAAGAGACCAGAAGATTCAAAGACATGTCCTTATTTTCATCAGTTGGATGCTTTATACAGGGAGAAAGGCAAAGGAGACAATTCCGGCGGCAGTGGCAGCGGCAGTGGTTTAAACTCGGCAGTGAAAGCAGAGAACATGGCCGCTCCGTTGATGGTGAGACCGGAGCAGCAATGGCCACCTCAGCAAGAAGAGAGAAACCGCGGAGAGGAAGAAGATAATATGGATGAAGATGATAGAGACGGAGAAGAAGAAGATATGGATGAAAGTGGTAGCGGTGGTGGTAACTTTGAGATAGTTGCAAGCAAGCCTACAGTGGGTGCATCAGCTTGA 2016 0.441 MLGDHSPLLGGGGDTSTPNMTAEGGAGGGVGSNSESDIERSRIEEGERSFGGNRWPRPETLALLRIRSDMDTVFRDASVKGPLWDEVSRKLAELGFHRSAKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHNHPSAYQQQQYQPQNQSKSPQISASMSTPTPTPTPSQVVTTGITESTTTVPMSLPPVVNTTVSIPHHVTVSSISMPQNNVVTTQTQTMNMNQIVSSINPSTSFQPPTTNPITTIPLPSFPNISPDLLSNSMASSYSTSSEDTTEEGSRKRKRKWKDFFERLMKEVIEKQEDLQKRFLEAIEKREQEKVAREEAWRAQEMLRITREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGETLSNINIAQPPPPQQPQRNATPTPPPVPAPAPTPTAAPAPTSAPAPTPTAAPAPTSAPASTLAVQVHAPPPLQPPSVTKPSQPIVPQQQLVMNREIVRFDNNGENFMGASPSRWPKVEVEALINLRTSMDNKYQENGPKGPLWEDISSAMRNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKGKGDNSGGSGSGSGLNSAVKAENMAAPLMVRPEQQWPPQQEERNRGEEEDNMDEDDRDGEEEDMDESGSGGGNFEIVASKPTVGASA 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04515 671 SMART sant 51 113 IPR001005 -
Vivi1g04515 671 SMART sant 491 553 IPR001005 -
Vivi1g04515 671 Gene3D - 495 556 - -
Vivi1g04515 671 Gene3D - 55 116 - -
Vivi1g04515 671 MobiDBLite consensus disorder prediction 631 652 - -
Vivi1g04515 671 CDD GT1 53 118 - -
Vivi1g04515 671 FunFam Trihelix transcription factor GT-2 55 116 - -
Vivi1g04515 671 FunFam Trihelix transcription factor GT-2 495 556 - -
Vivi1g04515 671 Pfam Myb/SANT-like DNA-binding domain 493 580 IPR044822 -
Vivi1g04515 671 Pfam Myb/SANT-like DNA-binding domain 53 139 IPR044822 -
Vivi1g04515 671 PANTHER FI21293P1 19 640 - -
Vivi1g04515 671 MobiDBLite consensus disorder prediction 37 52 - -
Vivi1g04515 671 MobiDBLite consensus disorder prediction 268 284 - -
Vivi1g04515 671 ProSiteProfiles Myb-like domain profile. 493 551 IPR001005 -
Vivi1g04515 671 Coils Coil 298 329 - -
Vivi1g04515 671 MobiDBLite consensus disorder prediction 583 671 - -
Vivi1g04515 671 MobiDBLite consensus disorder prediction 268 294 - -
Vivi1g04515 671 MobiDBLite consensus disorder prediction 385 443 - -
Vivi1g04515 671 MobiDBLite consensus disorder prediction 390 434 - -
Vivi1g04515 671 ProSiteProfiles Myb-like domain profile. 53 111 IPR001005 -
Vivi1g04515 671 MobiDBLite consensus disorder prediction 1 55 - -
Vivi1g04515 671 MobiDBLite consensus disorder prediction 148 182 - -
Vivi1g04515 671 CDD GT1 493 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04515 Vivi-Chr1 96492146 96495612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04515 471 620 Trihelix Transcription Factor Family AT1G76880 65.584 7.35e-60 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi1g04515 Myb_DNA-bind_4 2.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04515 - - vvo:131628407 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05222 2 175405213 175408888 Vivi1g04515 1 96492146 96495612 PCT