Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04514 ATGGATGTGAATTTGTCACAAGGTGGTGTTGGAAATTCTTTTGGTGGGTTTGATTTACCTGGATCAATTCAGGTTCATCATCAAGCACACCATCCTCACACCATTCATCAACATCAACCTCACCCGAATCCGCGTCAAGGGTCTTCGCTACATTCGTCGGTTCATGATGGGTTTTCGCTCTTGCAGAACTGTGATCAAACTGTTTCGATGACGGATTACAGTAAGGGAGAGAGAAGTAAGAACTCGACTAGTGATGAGGATGAGCCGAGTTTTAACGAGGAGGGTTTTGACGGTCAACATGAAGGGGGTAGAGGTAAGAAGGGACCTTCGTCGCCTTGGCAGCGTGTGAAGTGGGATGATAAGATGGTGAGGCTTATGATTACTGCTGTTTCGTATATTGGCGAGGATATAACGTCTGATGGTGGCGGTGGTGGTGGTGGACGAAGGAAATTTACGGTTTTACAGAAGAAGGGTAAGTGGAAATCTGTATCTAAGGTTATGGCTGAAAGAGGTTATCATGTTTCGCCGCAACAATGTGAGGATAAGTTCAATGATCTTAATAAAAGGTATAAAAAGCTTAATGATATGTTAGGGAGAGGGACTTCTTGTGAGGTTGTTGAAAATCCTTCGCTTTTGGATGTAATTAATTTTCTTACCGAGAAAGAGAAGGACGATGTTCGGAAAATATTAAGCTCGAAACACTTGTTTTATGAAGAGATGTGTTCTTATCATAATGGTAATAGGTTGCATTTGCCGCATGATCCTGCATTGCAATGTTCGATGCAGTTAGCTCTCCGAAATAGGGATGATCATGATCATGATAACGATGATATCAGAATGTCCCATGTCGAGGATCACGATGATGACGAGCATGATGTTGAAATTGATGAACGCGATGATTTTAAAGTGCACTGTGCTTCCCGTGGTGATAGCAGAGGAGTATATGAGCGGTTAGGTGGATCTATGAAGAACTTGAAACAAATCCAAGGCCAAGAAGATGGTAATACTTCAAATTGTCAAGATTATTTTAACCAAGGTTTGCATCCACGTGGACAAACGGTTCCTCTTGACGGTAATCAAGTTTTATCCGAAAACACGAGAGCAACATGGTTACAGAAGCAATGGGTTGACATGCGCCAAGTTCAATTAGAAGAGCAAAAGCTACAAATTCAGGCTGAGACGTTGGAATTAGAGAAACAAAGATTCAAGTGGCAGAGGTTTAGTAAGAAAAAGGACCGGGAGTTGGAGAAGATGAGTCTAGAAAACGAAAGAATGAAGCTTGAAAATGAACGCATGGCTTTAGAATTGAAGCGAAAGGAAATGGGCATCAGCTTTAACTAG 1341 0.4191 MDVNLSQGGVGNSFGGFDLPGSIQVHHQAHHPHTIHQHQPHPNPRQGSSLHSSVHDGFSLLQNCDQTVSMTDYSKGERSKNSTSDEDEPSFNEEGFDGQHEGGRGKKGPSSPWQRVKWDDKMVRLMITAVSYIGEDITSDGGGGGGGRRKFTVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCEVVENPSLLDVINFLTEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQCSMQLALRNRDDHDHDNDDIRMSHVEDHDDDEHDVEIDERDDFKVHCASRGDSRGVYERLGGSMKNLKQIQGQEDGNTSNCQDYFNQGLHPRGQTVPLDGNQVLSENTRATWLQKQWVDMRQVQLEEQKLQIQAETLELEKQRFKWQRFSKKKDRELEKMSLENERMKLENERMALELKRKEMGISFN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04514 446 Coils Coil 408 440 - -
Vivi1g04514 446 Coils Coil 378 400 - -
Vivi1g04514 446 Gene3D - 118 192 - -
Vivi1g04514 446 MobiDBLite consensus disorder prediction 39 53 - -
Vivi1g04514 446 MobiDBLite consensus disorder prediction 72 115 - -
Vivi1g04514 446 MobiDBLite consensus disorder prediction 78 104 - -
Vivi1g04514 446 MobiDBLite consensus disorder prediction 16 53 - -
Vivi1g04514 446 Pfam Myb/SANT-like DNA-binding domain 115 243 IPR044822 -
Vivi1g04514 446 PANTHER F16F4.11 PROTEIN-RELATED 6 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04514 Vivi-Chr1 96355729 96358453 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi1g04514 Myb_DNA-bind_4 1.2e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04514 - - tpra:123906894 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05221 2 175295781 175297771 Vivi1g04514 1 96355729 96358453 PCT