Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04507 ATGGGGAAGAAGAAGCCATCGGCACGTGACGACGAGAATCCTCCGCAGCAAGGCGGTGGGAAATCGAAGAAAAAGTCTCAAGTCATCGACGACGATGAATACTCCATCGGAACCGAACTTTCAGAGGAGCCATCCTTGCCGCAGCCAGAAGAAAAGCAAGAAAAGCCAGGAAAAAAGAAAGGTAAAAAAGGTAACTCTAAATCTTTACAAGCTAAAGATAATGGTGATGATATTGATGAGGAGAACGACGATGATGTGCCTGAAATTGTGTTTGCTGGGAAGAAAAAGGGGAAATCGAAGAAAAGTGGCAGTGGGAGTGTGTTTACTGCTGCGGCTGGTTTTGGTTTGCTTGGGGATGAGGGGGAAGTTGATAATGATGACGATGAAGAGAAATCGGGGTTAACCGGTAATGGAGATGATGATGAGGATGAACCAGTTGTTAGTTTTACTGGGAAGAAGAAGTCTTCAAAAGGAAACAAGAAGGGCAGTTCTTCGTTTTCAGCGGTTAGTTTTGATGAGATTGATGGAGAGGATGAGAGTAAGAATGATAAGGTAGAAGACGACGATGATGAGGATATAGGACCAATCACTTTCACAGGTAAGAAGAAGAAGTCATCCAAGTCTTTGAAGAAGGCGGTTAGTTTTTCAAGTACAGATATTCCGGATGAAGATAGTGTTTCTGTATCTGAGTCTGCTAAGGGTGGCGATGATAAAGATGAAGACGATGTTTCCTTAGTTGAATTTACTGGTAAAAAGAAGTCATCTAAGAAGAAAAGTGGTAGTGCTGCTGCTAAAGTGAGTAATGAAGATGAGTTTGGGAGTGAAAGTGTAGATGTTGTTGAGAGTGAGAAACCTAGTGCTAATGTTGACAATGGCAATATAAGTAAGAGTGAAGAGGTTGTTGGAACTTCAAAAAATAAGAAAAAGAATAAGAAGAAGAGTGGGAGAACTGCTCAAGAGGAGGAGGATTTAGATAAGATTCTTGCAGAGCTTGGTGAAGCCCCTCCTACAGCAAAACCTTCTGCTCCTCCAAAGCAGGATGATAAAGTTCAGCCTGCTCCGGAAGTTGGTTCTGTCCCTGGTGCTTCAGGGGAAAAAGAGGGAGAAGAGGAGATTGTAGAATCAGCTGCTGCAAAAAAGAAGAAAAAGAAGAAAGAAAAGGAGAAGGAGAAGAAGGCAGCAGCCGCAGCAGCCGGAAGTTCAACGGCAAATGAAACGGCAGAAGTAGAGGCTGAGACAATTGAACCAAAGAAAAATGATTTGAAGTCCAAAGCAGCTGCTGACAAGAAATTGCCAAAGCATGTTAGAGAGAAGCAAGAATTACTAGCTCGAAGAAAAGAGGCTGAAGAAAAACAGAGAAGAGAAGAGGAGGAAAAGCTAAGGAAAGAAGAAGAGGAGCGACTAAGGCTAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAAACGTAGAAAGAAGGAAAAGGAAAAGGAAAAACTTCTGAAAAAGAAGCAAGAAGGTAAATTGTTAACTGGTAAGCAGAAGGAAGAAGCCCGGCGATTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACAGGGGGTGTGACTCTCCCCGCTGGGGACAGTGGTGCACCAACCAAGAAACCCATTTATCAGACGAAGAAGGGGAAATCAACTAGTCGAAATTATAATGGTGCTGCTGCTGTCAAGACAGACGACAGTAATGAAGCAAAGGAAACTACTGCTGATTTGGATTCAGAGGAACCAAAGAAGGTTGAAGAAGTGGAGTCGGTGCAGAAGGAGGATAAAGTTGAACTTCCGGAAGCTGTTGAAGAGGATAGAGTGGAAGAAGATGATGTTGAGGATGAATGGGACGCCAGAAGCTGGGATGATGTCAATCTGAATGATAAGGGTGCATTTGCTGATGAAGAAGTTGACTCTGAGCCTGAAATGATTGTCAAAAAAGAGATTAAAACTGGCATACCTGCTAAAAATGCTGCAGGTGCTACAAGTAAAACTGTTTCGAAGCATGTCGCCGAAGAAATTGAAGATAGAAAACAGGCCAAAGTTGTGGTTGAGGACAAAAAGAAAAAGCCCGACCCACAACATTCTGCTGTGTCTTCTAAGCCGAGCGATGCAAACCTCCGATCACCAATATGCTGCATCATGGGTCATGTGGACACTGGCAAAACCAAGCTTCTGGATTGTATTCGAGGTACCAATGTTCAAGAAGGTGAGGCTGGCGGTATCACCCAACAGATTGGCGCAACATACTTTCCTGCTGAGAACATACGTGATAGAACTAAGGAATTGAAAGCTGATGCAACACTGAAAGTTCCAGGTCTACTGGTTATTGATACCCCAGGCCACGAGTCATTCAATAATCTGAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATCTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTAAAGAGTCACTTGAACTATTAAAAATGAGGAACACAGAATTCATTGTTGCATTGAATAAGGTTGATAGGCTTTATGGCTGGAAAACATGTCGCAATGCTCCAATTCGTAAAGCAATGTTGCAGCAGTCTAAGGATGTTCAAAATGAGTTCAATATGAGGCTCGAACAGATTGTTACCCAGTTCAAGGAACAGGGGCTAAATACTGCATTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCCACAAGTGCAATAAGCGGTGAAGGAATCCCAGATATGTTATTACTATTGGTTCAGTGGACCCAAAAGACCATGATTGAGAAACTTACATACAGTGATGAAGTGCAGTGTACAGTTTTGGAAGTCAAGGTTATTGAAGGCCATGGAACTACTATTGACGTTGTTTTAGTTAATGGCGTCCTTCATGAAGGAGATCAAATAGTTGTACCTGGAATGCAGGGTCCAATTGTTACCTCAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCGATGGGCATCAAGATCACTGCCCAGGGACTTGAACATGCTATTGCTGGCGGAAGTTTATATGTGGTGAAGCCTGATGATGATTTAGAATATATTAAAACAGCAGCCTTAGAAGACGTGGAGTCAGTCTTGAGCAGGATTGATAGGAGTGGTGAGGGCGTTTGTGTCCAGGCATCAACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACTCCAGCAGTGAATATTCCAGTTAGTTCTATAAGCATAGGCCCTGTACATAAGAAGGATGTGATGAAAGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATTCTACTATATTGGCATTCGATGTCAAAGTCACCCCTGAAGCCAGGGAACTTGCAGAGGAATTGGGCGTTAAAATATTTATTGCCGATATCATTTATCATCTATTTGATCAATTTAAGGCTTACATGGAAAACATTAAGGAGGAGAAAAAGAAAGAATCGGCTGATGAGGCAGTCTTCCCATGTGTTCTAAAGATCTTACCAAACTGTGTTTTCAACAAGAAGGATCCGATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAAAGATCGGAACTCCAATTTGTATTCCATCCCAAGATTTCATTGACATTGGACGCATTGCCTCCATTGAGAATAACCACAAACCAGTTGATTATGCAAAGAAAGGGCAGCAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAGGAACAGCAGAAAATGTTCGGCAGACATTTTGAGATGGATGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATTCTCAAATCTGATTATCGGGATGAACTAAGTAATGAAGAATGGAAGCTGGTGGTGAAGTTGAAGATTCTTTTCAGGATACAATGA 3900 0.4213 MGKKKPSARDDENPPQQGGGKSKKKSQVIDDDEYSIGTELSEEPSLPQPEEKQEKPGKKKGKKGNSKSLQAKDNGDDIDEENDDDVPEIVFAGKKKGKSKKSGSGSVFTAAAGFGLLGDEGEVDNDDDEEKSGLTGNGDDDEDEPVVSFTGKKKSSKGNKKGSSSFSAVSFDEIDGEDESKNDKVEDDDDEDIGPITFTGKKKKSSKSLKKAVSFSSTDIPDEDSVSVSESAKGGDDKDEDDVSLVEFTGKKKSSKKKSGSAAAKVSNEDEFGSESVDVVESEKPSANVDNGNISKSEEVVGTSKNKKKNKKKSGRTAQEEEDLDKILAELGEAPPTAKPSAPPKQDDKVQPAPEVGSVPGASGEKEGEEEIVESAAAKKKKKKKEKEKEKKAAAAAAGSSTANETAEVEAETIEPKKNDLKSKAAADKKLPKHVREKQELLARRKEAEEKQRREEEEKLRKEEEERLRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGVTLPAGDSGAPTKKPIYQTKKGKSTSRNYNGAAAVKTDDSNEAKETTADLDSEEPKKVEEVESVQKEDKVELPEAVEEDRVEEDDVEDEWDARSWDDVNLNDKGAFADEEVDSEPEMIVKKEIKTGIPAKNAAGATSKTVSKHVAEEIEDRKQAKVVVEDKKKKPDPQHSAVSSKPSDANLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTKESLELLKMRNTEFIVALNKVDRLYGWKTCRNAPIRKAMLQQSKDVQNEFNMRLEQIVTQFKEQGLNTALYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQKTMIEKLTYSDEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVPGMQGPIVTSIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGGSLYVVKPDDDLEYIKTAALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPAVNIPVSSISIGPVHKKDVMKASVMLEKKREYSTILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFKAYMENIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQDFIDIGRIASIENNHKPVDYAKKGQQVAIKIVGSNSEEQQKMFGRHFEMDDELVSHISRRSIDILKSDYRDELSNEEWKLVVKLKILFRIQ 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 115 622 - -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 364 381 - -
Vivi1g04507 1299 Coils Coil 366 398 - -
Vivi1g04507 1299 PRINTS GTP-binding elongation factor signature 775 785 IPR000795 GO:0003924|GO:0005525
Vivi1g04507 1299 PRINTS GTP-binding elongation factor signature 791 802 IPR000795 GO:0003924|GO:0005525
Vivi1g04507 1299 PRINTS GTP-binding elongation factor signature 827 836 IPR000795 GO:0003924|GO:0005525
Vivi1g04507 1299 PRINTS GTP-binding elongation factor signature 711 724 IPR000795 GO:0003924|GO:0005525
Vivi1g04507 1299 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1033 1161 IPR036925 -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 672 695 - -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 286 300 - -
Vivi1g04507 1299 Pfam Elongation factor Tu domain 2 946 1023 IPR004161 GO:0005525
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 314 329 - -
Vivi1g04507 1299 CDD IF2_eIF5B 710 920 - -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 672 704 - -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 210 225 - -
Vivi1g04507 1299 Gene3D Translation factors 930 1048 - -
Vivi1g04507 1299 Pfam Translation-initiation factor 2 1039 1148 IPR023115 -
Vivi1g04507 1299 Gene3D - 1049 1155 IPR036925 -
Vivi1g04507 1299 FunFam eukaryotic translation initiation factor 5B 930 1049 - -
Vivi1g04507 1299 Gene3D Translation factors 1162 1299 - -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 603 618 - -
Vivi1g04507 1299 FunFam Eukaryotic translation initiation factor 5B 1049 1155 - -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 564 602 - -
Vivi1g04507 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 998 IPR027417 -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 179 193 - -
Vivi1g04507 1299 SUPERFAMILY Translation proteins 1166 1297 IPR009000 -
Vivi1g04507 1299 Pfam Elongation factor Tu GTP binding domain 711 919 IPR000795 GO:0003924|GO:0005525
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 229 254 - -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 120 144 - -
Vivi1g04507 1299 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 707 923 IPR000795 GO:0003924|GO:0005525
Vivi1g04507 1299 FunFam Eukaryotic translation initiation factor 5B 701 929 - -
Vivi1g04507 1299 Coils Coil 431 498 - -
Vivi1g04507 1299 Gene3D - 701 929 IPR027417 -
Vivi1g04507 1299 CDD aeIF5B_II 931 1036 - -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 544 561 - -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 410 516 - -
Vivi1g04507 1299 CDD IF2_aeIF5B_IV 1170 1265 - -
Vivi1g04507 1299 MobiDBLite consensus disorder prediction 1 85 - -
Vivi1g04507 1299 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 266 1292 IPR015760 -
Vivi1g04507 1299 NCBIfam small GTP-binding protein domain 712 836 IPR005225 GO:0005525
Vivi1g04507 1299 FunFam Eukaryotic translation initiation factor 5B 1162 1299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04507 Vivi-Chr1 96189387 96200259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04507 1 1299 Eukaryotic Initiation Factors Gene Family AT1G76810 62.678 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04507 K03243 - gmx:100814640 1547.72