Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04488 ATGGCAGGATTTTGGAGTGTGTTTTGTGGGGAATCTGGTTGTTCAAAGCCTTGCAGTTATTATGATGTTAAGTTTCTCATTGATCCTTCCTCATGCATCAACCATGTCTTAGTATCTTGCTTTGATGTGTTTCTTCTCATCATGCTCCTATTTATAATGATCCACAAGTCGTTATTAAAACCATCTCAGGGTCATATACATAGGGAAACATACTCAAATCTGCAACTAGTTTCTGCCATAACCAATGGTGTTCTTGGGTTGTTGCATTTGTTTTATGGCATTTGGATTTTAGAAGACAAGTTGAGGAAAAACCAAACTGCATTGCCTCTTGATTTGTGGTTGCTGGAATTCTTGCAGGGATTAACATGGATGTTAGTTGGTTTAACATTAAGTCTTAAGTTTAAACAACTTCCAAGAGCATGGTTAAGGTTTTTTACTATTCTAATCTTCTTAGTTTCTGGTATAAACTGTGGCATATCCTTGTTTTATGTAATCGGTAGTATGCACTTGTCCTTTAAGGTAGCAATAGATGTTCTATCTTTTCCTGGGGCAATTTTATTGCTATTATGCACATATAAGGAATCTAAGAGTAGCGACACTGACAGAGAAATCAATGAAAGCCTTTACGCTCCTTTAAATGGTGAATCGATTAAAAACGATTCTGTTAGTCACGTGTCGCTATTTGCGAAAGCGGGATTCTTCAGTAGGATTTCATTTTGGTGGCTGAATTCTTTGATGAAGAGAGGTAAAGAGAAAACACTTCAGGACGAAGATGTGCCCAAGTTGAGGGAGGAAGATAGAGCAGAAAGTTGTTATTCGATGTTTCTAGAGCAATTAAACAAGCAAAAACAGAAGGATCCATCCTCACAGCCATCTATTTTGAAGACAATGGTTTTATGCCATTGGAGAGAAATTTTAATATCTGGACTCTTTGCAATGCTTAAGGTACTTGCACTTTCTTCTGGACCTATGCTTCTGAATTCTTTTATATTAGTTGCTGAGGGTTATGAGAGTTTCAAATATCAAGGTTTTGTGTTAGCCATAGCACTTTTCTTTATAAAAACTATAGAATCTCTATCACAAAGGCAGTGGTATTTCCGGTCAAGACTCATTGGTCTCAAAGTTAAGTCGCTGCTAACAGCAGCCATCTATAAAAAACAATTGAGGTTATCCAATTCTGCGAGATTGGTGCACTCTAGTGGTGAGATAATGAATTATGTAACCGTGGATGCTTATAGAATTGGAGAATTTCCTTACTGGTTTCACCAAACATGGACAACAAGCTTCCAACTATGCATCTCGTTGGTAATACTTTTCCGTGCAGTTGGGCTAGCTACAATTGCATCCTTGGTTGTGATATTTATCACTGTACTTTGCAATACACCACTTGCAAAGTTACAACACAAGTTTCAAAGCAAACTAATGGTTGCACAAGATGAGAGATTGAAGGCTACTTCTGAGGCTCTTGTGAATATGAAGGTACTGAAATTGTATGCATGGGAAACCAGCTTTAAAAATTCTATAGAAAGATTACGGAATGAGGAACTCAAATGGTTGTCTGCAGTACAATTCAGAAAGGCATACAACACATTTCTCTTTTGGTCGTCACCAGTTTTGGTCTCTGCTGCTACGTTCGGAGCGTGTTATTTTCTTAACGTGCCTTTGCATGCGAATAATGTTTTCACTTTCGTGGCAACTTTACGCCTTGTTCAAGATCCAATTAGAACCATCCCCGATGTTATTGGGGTGGTTATTCAAGCAAAAGTTGCTTACGCTCGGATTTTAAAATTCCTGGAGGCGCCCGAACTGCAGAGTGAAAATATTGGGAAGAGGTGTTCAGAAGACAATATGAGGGGCTCAATTTCGATCAAGTCTGCTGAATTTTCATGGGAGGACAATAATGTATCCAATCCAACATTGAGAAATGTTAATTTGGAAGTAAGACCTGGCCAAAAGGTCGCGATTTGTGGTGAAGTTGGCTCAGGCAAATCAACTCTCTTAGCAGCCATTCTCAGAGAAGTTCCTATCACTCAAGGGAAAATTGATGTTTATGGGAACTTTGCGTATGTTTCTCAAACAGCATGGATACAAACAGGATCAATAAGGGAAAATATAATGTTTGGATCACCTATGGATGTTCAAAAATATCAGGAAACTCTTCATAGGACTTCACTAGTGAAAGATCTTGAGCTGTTTCCTCATGGTGATCTCACTGAAATAGGAGAGAGAGGGGTTAACTTAAGTGGTGGTCAGAAGCAACGAATTCAACTTGCCCGAGCTCTTTATCAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACAGACTGCCACAAATTTGTTTAATGAATACATTATGGAAGGGCTTGCTGGGAAGACAGTTTTGCTTGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTTTGTTTTGTTGATGTCAGACGGCAAAATCCTACAATCTGCTTCGTATCAACATTTGTTGACCTCAAGCAAAGATTTTCAGGACCTTGTGAATGCTCACAAAGAGACTGCTGGTTCTGACCGGCTTGTGGATGTTACTTCTTCTGAAAGAAATTCAAATTCTGCCAAAGAGATAAGAAAAACGTATGTGGAGAAGGAAAAGCAATTCGCAGCACCAGAAGGAGATCAATTGATTAAGCAAGAAGAGAGAGAGACAGGAGACCAAGGGTCTAAGCCTTACTTAACGTACCTGAATCAGAACAAGGGATACATATACTTCTCCGTGTCTTTTATTTCTCAAATTATATTTGTGATTGGTCAAATATTGCAAAACTCGTGGATGGCTACTAATGTTGACAATCCTAAAGTCAGCACTTTGAAACTGATTCTAGTTTACTTGTCGATTGGAGTTACTTCAACAGTGTTCTTATTGATGAGAAGTCTTTTTACAGTTGCTTTGGGCCTTCAATCTTCAAAGTCTTTATTTTTACAGCTACTTAACTCCCTTTTTCGTGCACCTATGTCGTTTTATGATTCCACACCTTTGGGACGGATACTTAGTAGGGTCTCTTCTGATCTCAGCATTGTTGATCTCGATGTTCCATTTGGTCTTCTTTTCGCCGTAGCAGCTACTTCCAATTGTTATGCTAGTCTAACTGTTTTAGCAGTAGTTACTTGGCAAGTCTTGTTTGTCTCCATACCAATGCTCTATTTTGCACTGCGGTTGCAGAGATTCTACTTTGCTTCAGCAAAAGAACTGATGCGGATGAATGGCACAACAAAATCCTTTGTAGCTAACCATCTTGCGGAATCAGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAAGAGGAAGATCGTTTTTTCGTAAAGAACCTTGATCTAATCGATATCAATGCTACTCCTTTCTTTCATAGTTTTGCTGCAAATGAGTGGTTGATTCAACGGTTAGAAACAGTCAGTGCTGTTGTTCTCGCATCTGCCGCACTGTGTATAGTTGTACTTCCACCTGGAACATTTTCCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCCCTTAATGCTTCCTTAGTATTCTCAATTCAAAATCAATGCAATATAGCAAATTACATAATATCAGTGGAGAGGCTAAATCAATATATGCATGTACCAAGTGAGGCTCCTGAAGTAATAGAAGGAAACCGCCCTCCGATGAATTGGCCAGTTGTTGGTAAAGTAGAAATAAAGGAACTCAAGATACGGTACAGGCATGATGCACCACTAGTACTCTGCGGAATCACGTGCACATTTGAAGGAGGACACAAAATTGGTATAGTTGGTCGAACAGGAAGCGGCAAGACCACTCTTATTGGTGCTTTATTTCGTCTAGTCGAGCCAGCTGGTGGAAAAATCATTGTTGATGGCATTGACATTTGTTCTATTGGACTTCATGATTTGAGGTCGCGCTTTGGTATTATACCTCAGGATCCTACTCTTTTTAATGGAACAGTCAGATACAATTTGGATCCTTTATTTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGCAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGGTGGTTTAGATTCCTCAGTCGTTGAAGATGGGGCGAATTGGAGCATGGGACAGAGACAATTGTTCTGTTTGGGCCGTGCTTTGCTCAGGAGAAGTCGGGTATTAGTGCTCGATGAAGCAACTGCGTCAATTGATAATGCAACTGACTTGATTCTGCAGAAAACTATTAGGACTGAATTTGCAGATTGTACGGTAATCACGGTAGCTCACAGGATACCGACCGTGATGGATTGCACAAAGGTTCTTTCCATCAGTGATGGAAAATTAGTAGAGTATGATGAGCCAATGAAGTTGATGAAGAGAGAAGGATCTTTGTTTGGGAAGCTTGTCAAAGAATACTGGTCTCATTTTCAATCTGCAGAGTCACATTAA 4440 0.3962 MAGFWSVFCGESGCSKPCSYYDVKFLIDPSSCINHVLVSCFDVFLLIMLLFIMIHKSLLKPSQGHIHRETYSNLQLVSAITNGVLGLLHLFYGIWILEDKLRKNQTALPLDLWLLEFLQGLTWMLVGLTLSLKFKQLPRAWLRFFTILIFLVSGINCGISLFYVIGSMHLSFKVAIDVLSFPGAILLLLCTYKESKSSDTDREINESLYAPLNGESIKNDSVSHVSLFAKAGFFSRISFWWLNSLMKRGKEKTLQDEDVPKLREEDRAESCYSMFLEQLNKQKQKDPSSQPSILKTMVLCHWREILISGLFAMLKVLALSSGPMLLNSFILVAEGYESFKYQGFVLAIALFFIKTIESLSQRQWYFRSRLIGLKVKSLLTAAIYKKQLRLSNSARLVHSSGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILFRAVGLATIASLVVIFITVLCNTPLAKLQHKFQSKLMVAQDERLKATSEALVNMKVLKLYAWETSFKNSIERLRNEELKWLSAVQFRKAYNTFLFWSSPVLVSAATFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAYARILKFLEAPELQSENIGKRCSEDNMRGSISIKSAEFSWEDNNVSNPTLRNVNLEVRPGQKVAICGEVGSGKSTLLAAILREVPITQGKIDVYGNFAYVSQTAWIQTGSIRENIMFGSPMDVQKYQETLHRTSLVKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAQTATNLFNEYIMEGLAGKTVLLVTHQVDFLPAFDFVLLMSDGKILQSASYQHLLTSSKDFQDLVNAHKETAGSDRLVDVTSSERNSNSAKEIRKTYVEKEKQFAAPEGDQLIKQEERETGDQGSKPYLTYLNQNKGYIYFSVSFISQIIFVIGQILQNSWMATNVDNPKVSTLKLILVYLSIGVTSTVFLLMRSLFTVALGLQSSKSLFLQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLLFAVAATSNCYASLTVLAVVTWQVLFVSIPMLYFALRLQRFYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFVKNLDLIDINATPFFHSFAANEWLIQRLETVSAVVLASAALCIVVLPPGTFSSGFIGMALSYGLSLNASLVFSIQNQCNIANYIISVERLNQYMHVPSEAPEVIEGNRPPMNWPVVGKVEIKELKIRYRHDAPLVLCGITCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLFQHSDQEIWEVLGKCQLQEAVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRRSRVLVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGKLVEYDEPMKLMKREGSLFGKLVKEYWSHFQSAESH 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04488 1479 FunFam ABC transporter C family member 10 605 858 - -
Vivi1g04488 1479 Pfam ABC transporter 640 774 IPR003439 GO:0005524
Vivi1g04488 1479 SUPERFAMILY ABC transporter transmembrane region 919 1213 IPR036640 GO:0005524|GO:0016020
Vivi1g04488 1479 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Vivi1g04488 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 586 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g04488 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 845 IPR027417 -
Vivi1g04488 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1467 - -
Vivi1g04488 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1223 1460 IPR027417 -
Vivi1g04488 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 845 IPR003439 GO:0005524
Vivi1g04488 1479 Gene3D ABC transporter type 1, transmembrane domain 882 1214 IPR036640 GO:0005524|GO:0016020
Vivi1g04488 1479 CDD ABC_6TM_ABCC_D1 307 594 IPR044746 GO:0140359
Vivi1g04488 1479 FunFam ABC transporter C family member 3 1216 1468 - -
Vivi1g04488 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Vivi1g04488 1479 Pfam ABC transporter transmembrane region 306 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g04488 1479 Pfam ABC transporter transmembrane region 917 1156 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g04488 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1467 IPR003439 GO:0005524
Vivi1g04488 1479 SUPERFAMILY ABC transporter transmembrane region 294 599 IPR036640 GO:0005524|GO:0016020
Vivi1g04488 1479 Gene3D - 597 868 IPR027417 -
Vivi1g04488 1479 CDD ABCC_MRP_domain1 621 822 - -
Vivi1g04488 1479 FunFam ABC transporter C family member 10 289 602 - -
Vivi1g04488 1479 SMART AAA_5 1259 1451 IPR003593 GO:0016887
Vivi1g04488 1479 SMART AAA_5 649 822 IPR003593 GO:0016887
Vivi1g04488 1479 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524|GO:0016887
Vivi1g04488 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g04488 1479 Gene3D - 1217 1468 IPR027417 -
Vivi1g04488 1479 Gene3D ABC transporter type 1, transmembrane domain 294 596 IPR036640 GO:0005524|GO:0016020
Vivi1g04488 1479 FunFam ABC transporter C family member 5 883 1214 - -
Vivi1g04488 1479 Pfam ABC transporter 1252 1398 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04488 Vivi-Chr1 95518591 95525215 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04488 1229 1479 Calmodulin-binding Proteins AT2G36910 29.020 9.80e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04488 K05666 - gmx:100811468 2429.82