Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04486 ATGATTTGTTTCTTGATGTTGAAACAGCTACGCTACAGGCATGATGCACCACTAGTACTCTGCGGAATCACATGCACATTTGAAGGAGGACACAAAATTGGTATAGTTGGTCGAACAGGAAGCGGCAAGACCACTCTTATTGGTGCTTTATTTCGTCTAGTCGAGCCAGCAGGTGGAAAAGTCATTGTTGATGGCATTGACATTTGCTCTATTGGACTTCATGATTTGAGGTCGCGCTTTGGTATTATACCTCAGGATCCTACTCTTTTTAACGGAACAGTAAGATACAATTTGGATCCCTTATTTCAACACTCTGACCAAGAGATATGGGAGGTTCTTGGCAAGTGTCAGTTGCAAGAGACTGTCCAAGAGAAAGAAGGTGGTTTAGACTCATCAGTTGTTGAAGATGGGGCAAATTGGAGCATGGGACAACGGCAATTGTTCTGTCTAGGCCGTGCTTTGCTGAGGAGAAGTCGGGTATTGGTGCTCGATGAATCAACCGCATCAATTGATAATGCAACAGACTTGATTCTGCAGAAAACTATTAGGACTGAATTTGCAGATTGTACGGTAATCACGGTAGCTCACAGGATACCAACCGTGATGGATTGCACAAAGGTTCTTTCCATCAGTGATGGAAAATTAGTAGAGTATGATGAGCCAATGAAGTTGATGAAGAGAGAAGGATCTTTGTTTGGGAAGCTTGTCAAAGAGTACTGGTCTCATTTTCAATCTGCAGAGTCACATTAA 750 0.4267 MICFLMLKQLRYRHDAPLVLCGITCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKVIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLFQHSDQEIWEVLGKCQLQETVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRRSRVLVLDESTASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGKLVEYDEPMKLMKREGSLFGKLVKEYWSHFQSAESH 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04486 249 Gene3D - 7 238 IPR027417 -
Vivi1g04486 249 Pfam ABC transporter 22 168 IPR003439 GO:0005524
Vivi1g04486 249 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 9 237 - -
Vivi1g04486 249 SMART AAA_5 29 221 IPR003593 GO:0016887
Vivi1g04486 249 FunFam ABC transporter C family member 3 3 238 - -
Vivi1g04486 249 CDD ABCC_MRP_domain2 9 221 - -
Vivi1g04486 249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 5 237 IPR003439 GO:0005524
Vivi1g04486 249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 230 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04486 Vivi-Chr1 95514116 95515343 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04486 19 249 Calmodulin-binding Proteins AT2G36910 28.511 3.02e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04486 K05666 - vvo:131643614 493.041