Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04484 ATGACCGGATTTTGGAGTGTGTTTTGCACTGAATCTGTTAGTTCAAAGTCTTGCACTATTTATGATATTAAGTTTCGCATTGATCCTTCCTCATGTATCAACCATTTCTTAATATCTTGTTTTGATGTCTTGCTACTCATCATGCTCCTATGTATAATCATCCACAACACGTTACTGAAACCATATCAGAGTCTTGTTACACATAGGGAAAGATATTCAAATCTGCAACTAGTTTCTGCCATAACCAATGGTGTACTTGGGTTGGTTCATTTATTTTATGGCATTTGGATTTTAGAAGACAAGTTGAGGAAAAACCAAACTGCATTGCCTCTTGATTTGTGGTTGATGGAATTCTTTCAGGGATTAACATGGTTGTTAGTTGGTTTAACATTGAGTCTTAAGTTTAAACAACTTCCGAGAGCATGGCTAAGGGTTTTTTCTGTTCTTATGTTGTTGGTTTCTGGTATAAACTTTGTTATGTCTTTGTTTTATGCAATCCGCAGTATACAATTGTCCATCAAGGTAGCATTAGATATTCTATCTTTTCCTGTGGCAATTTTATTGCTATTATGCACATATAGGGACACTGAGAGAGGAATTGATGAAGGCCTTTACGTCCCTTTAAACGGAGACTCAAATAAAAATGATTTTGTTAGCCATGAGACGCTATTTGCAAAAGCTGGATTCTTTAGTCGGATGTCATTTTGGTGGTTGAATTCATTGATGAAGAAAGGTAAAGAGAAATCACTTCAGGACGAAGATGTACCCAAGTTGAGGGAGGAAGATAGAGCGGAAAATTGTTATTCGCTGTTTCTAGACATATTGAACAAGCAGAAACAGAAGGATCCATCCTCACAACCATCTGTTTTGAAGACAATCGTTTTGTGTCATTGGAGAGAAATTTTGATTTCTGGATTCTTTGCGTTTCTTAAGGTATTTGCACTGTCTTCTGGACCTATGCTTTTGAATTCCTTTATATTAGTGGCCGAGGGTTATGAGAGTTTCAAATACGAAGGTTTTGTATTGGCCATAGCATTTTTCGTTTTAAAAATTGTAGAATCGCTGTCACAAAGGCAGTGGTACTTCCGCTCCAGACTCGTCGGTCTCAAAGTTAGGTCGCTGCTAACTGCAGCAGTTTATAAAAAGCAACTGAGGTTATCCAATTCTGCTAGATTGATGCATTCTAGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATCGGAGAGTTTCCATACTGGTTTCACCAAACATGGACTACGAGCTTCCAGCTATGTATCTCATTAGTAATACTTTTCCGTGCGGTTGGGCTAGCTACAATTGCCTCCTTGGCTGTGATAGTTATCACTGTACTTTGCAATACACCAGTTGCAAAGTTACAACACAAGTTTCAAAGCAAACTAATGGTGGCACAAGATGCGAGATTGAAGGCTATTTCTGAGGCTCTTGTTAACATGAAGGTACTGAAGTTGTATGCATGGGAAACCAGCTTTAAAAACTCTATAGAAGGATTAAGAAATGAGGAGCTTAAATGGTTGTCTGCAGTGCAATTGAGAAAGGCATACAACCAATTTCTCTTTTGGTCATCACCTGTTTTGGTTTCTGCTGCCACGTTTGGAGCGTGTTATTTTCTAAATGTTCCTTTGCATGCGAACAATGTTTTCACTTTTGTGGCAACTTTACGCCTTGTTCAAGATCCGATTAGAGCCATTCCCGATGTTATTGGAGTGGTCATTCAGGCAAAAGTTGCATTCACTAGGATTGTAAATTTCCTTGAGGCACCTGAACTGCAAAGTGAAATTGTTGGGAAGAGGTGTTCTGATGGAAATATGAGGGGATCAATTTCAATCAAGTCTGCTGAATTTTCATGGGAAGATAATAATATATCAAAGTCAACTTTGAGAAATATAAATTTGGAAGTTAGCCCTGGACAAAAGGTTGCGATTTGTGGAGAGGTTGGCTCAGGAAAATCAACTCTCTTAGCGGCAATTCTCAGAGAAGTTCCTAACACTCAAGGGAAAATTGATGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAAACGGGGACAGTACGGGATAATATATTGTTTGGATCACCTATGGATGCTCAAAAATATCAGGAAACACTTCACAGATCGTCACTAGAGAAAGACCTTGAGTTGTTTCCCCATGGTGATCTCACTGAAATAGGAGAGAGAGGGGTTAACTTGAGTGGTGGTCAGAAGCAGCGAATTCAACTCGCCCGCGCACTTTATCAGAATGCTGATATATATCTCTTAGACGACCCATTCAGTGCTGTTGATGCACACACTGCCACAAACTTGTTTAATGAATACATTATGGAAGGACTTGCTGAGAAAACGGTCTTGCTTGTAACTCATCAAGTTGACTTCCTTCCAGCATTTGATTTTGTTTTGTTGATGTCAGATGGGGAAATCCTACAAGCTGCTCCTTATCACAACGTGTTGACATCAAGCAAAGATTTTCAGGATCTTGTGAATGCTCACAAGGAAACTGCTGGTTCTGAGCGGCTTATGGATGTTACTTCTTCTGAAAGACCTTCAAGTTCTGCTAAAGAGATAAGAAAAACACATGTAGAGAAGGAAAAGCAGTTCGAAGCACCAAAAGGTGATCAATTGATTAAGCAAGAAGAGAGAGAGATAGGAGACCATGGCCTTAAGCCATACTTACAGTATCTGAATCAGAACAAAGGATACGCATACTTCTTGGTCGCTTCTATATCTCAGCTTATATTTGTGATTGGACAGATATTGCAAAACTCATGGATAGCTGCTAATGTTGACAATCCTAAAGTCAGCACTCTGAGATTGATTCTAGTTTATTTGTTGATTGGAGTTACTTCAACAATCTTCTTATTCATGAGAAGTCTTCTTACAGTTGCTCTTGGTCTTCAGTCTTCGAAGTCTTTGTTTTTACAGCTACTAAACTCCCTTTTCCGTGCACCTATGGCGTTTTATGATTCCACACCTTTGGGACGGATACTAAGCAGGGTCTCTTCGGATCTTAGCATTGTTGATCTTGATGTTCCATTTGGCCTTCTTGTCGCCGTAGTAGCTACTACGAGTTGTTATGCAAGTCTAACAGTTTTAGCTGTTGTTACTTGGCAAGTCTTGTTTGTTTCCATACCAATGATTTATTTTGCAGTGCGCTTGCAGAAATACTACTTTGCTACAGCAAAAGAACTGATGCGGATGAATGGCACAACAAAATCCTTTATAGCTAACCATCTTGCAGAATCTGTTGCTGGGGCTGTGACAATAAGGGCTTTTGAAGAAGAAGATCGTTTTTTCGTAAAGAACCTTGATCTAATTAATGTCAATGCCACTCCTTTCTTTCATAGTTTTGCTGCAAATGAGTGGTTGATTCAGCGGTTAGAAACAGTAAGTGCAGTTGTTCTTGCATCTGCTGCACTTTGCATGGTTATACTTCCAACCGGAACATTCTCCTCCGGAGTTATTGGCATGGCTCTCTCTTATGGTCTTTCACTTAATATGTCCTTAGTATTTTCAATTCAACACCAATGCAATATAGCAAATTATATAATATCAGTGGAGAGGTTGAATCAATATATGCATGTACCAAGTGAGGCTCCAGAACTAATCGAAGGAAAACGTCCTCCGGTGAAATGGCCAGTTGTTGGTAGAGTAGAAATTAAGGAACTACAGATACGGTATAGGCCTGATACTCCACTAGTTCTCCGCGGGATCACATGTACATTTGAAGGAGGACACAAAATTGGTATAGTTGGTCGCACGGGAAGTGGCAAGACCACTCTTATTGGTGCTTTATTTCGTCTGGTGGAGCCAGCGGGTGGAAAAATAATCGTTGACAGTATTGACATTTGTTCCGTTGGACTTCATGATTTGAGGTCTCGTTTTGGTATTATACCCCAGGACCCTACTCTTTTTAATGGAACAGTTAGATACAATTTGGATCCTTTATCTCAACATTGCGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCAAGAGGCTGTGCAAGAGAAAGAAGGTGGTTTAGATTCCTCAGTTGTTGAAGATGGTGCGAATTGGAGCATGGGACAACGACAGTTATTCTGTTTGGGCCGCGCTTTACTAAGGAAAAGTCGGATATTGGTGTTGGATGAAGCAACTGCATCAATTGATAATGCAACTGACTTGATTCTCCAGAAAACCATTAGGACTGAGTTTGCTGATTGTACGGTAATCACGGTAGCTCACAGGATACCAACTGTGATGGATTGCACCAAAGTTCTTTCAATCAGTGATGGAAAACTGATGGAGTATGATGAGCCAATGAAGTTGATGAAGAGAGAAGGATCGTTGTTTGGGAAGCTTGTCAAAGAATACTGGTCTCATTTTCAATCCGCGGAATCTCATTAA 4428 0.3977 MTGFWSVFCTESVSSKSCTIYDIKFRIDPSSCINHFLISCFDVLLLIMLLCIIIHNTLLKPYQSLVTHRERYSNLQLVSAITNGVLGLVHLFYGIWILEDKLRKNQTALPLDLWLMEFFQGLTWLLVGLTLSLKFKQLPRAWLRVFSVLMLLVSGINFVMSLFYAIRSIQLSIKVALDILSFPVAILLLLCTYRDTERGIDEGLYVPLNGDSNKNDFVSHETLFAKAGFFSRMSFWWLNSLMKKGKEKSLQDEDVPKLREEDRAENCYSLFLDILNKQKQKDPSSQPSVLKTIVLCHWREILISGFFAFLKVFALSSGPMLLNSFILVAEGYESFKYEGFVLAIAFFVLKIVESLSQRQWYFRSRLVGLKVRSLLTAAVYKKQLRLSNSARLMHSSGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILFRAVGLATIASLAVIVITVLCNTPVAKLQHKFQSKLMVAQDARLKAISEALVNMKVLKLYAWETSFKNSIEGLRNEELKWLSAVQLRKAYNQFLFWSSPVLVSAATFGACYFLNVPLHANNVFTFVATLRLVQDPIRAIPDVIGVVIQAKVAFTRIVNFLEAPELQSEIVGKRCSDGNMRGSISIKSAEFSWEDNNISKSTLRNINLEVSPGQKVAICGEVGSGKSTLLAAILREVPNTQGKIDVYGKFAYVSQTAWIQTGTVRDNILFGSPMDAQKYQETLHRSSLEKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYIMEGLAEKTVLLVTHQVDFLPAFDFVLLMSDGEILQAAPYHNVLTSSKDFQDLVNAHKETAGSERLMDVTSSERPSSSAKEIRKTHVEKEKQFEAPKGDQLIKQEEREIGDHGLKPYLQYLNQNKGYAYFLVASISQLIFVIGQILQNSWIAANVDNPKVSTLRLILVYLLIGVTSTIFLFMRSLLTVALGLQSSKSLFLQLLNSLFRAPMAFYDSTPLGRILSRVSSDLSIVDLDVPFGLLVAVVATTSCYASLTVLAVVTWQVLFVSIPMIYFAVRLQKYYFATAKELMRMNGTTKSFIANHLAESVAGAVTIRAFEEEDRFFVKNLDLINVNATPFFHSFAANEWLIQRLETVSAVVLASAALCMVILPTGTFSSGVIGMALSYGLSLNMSLVFSIQHQCNIANYIISVERLNQYMHVPSEAPELIEGKRPPVKWPVVGRVEIKELQIRYRPDTPLVLRGITCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDSIDICSVGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHCDQEIWEVLGKCQLQEAVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRKSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGKLMEYDEPMKLMKREGSLFGKLVKEYWSHFQSAESH 1475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04484 1475 Pfam ABC transporter transmembrane region 301 567 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g04484 1475 Pfam ABC transporter transmembrane region 914 1178 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g04484 1475 FunFam ABC transporter C family member 10 601 854 - -
Vivi1g04484 1475 CDD ABCC_MRP_domain1 617 818 - -
Vivi1g04484 1475 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 923 1192 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g04484 1475 FunFam ABC transporter C family member 3 1212 1464 - -
Vivi1g04484 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1219 1456 IPR027417 -
Vivi1g04484 1475 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1231 1463 IPR003439 GO:0005524
Vivi1g04484 1475 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 302 582 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g04484 1475 Gene3D ABC transporter type 1, transmembrane domain 290 593 IPR036640 GO:0005524|GO:0016020
Vivi1g04484 1475 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 225 1463 - -
Vivi1g04484 1475 SMART AAA_5 1255 1438 IPR003593 GO:0016887
Vivi1g04484 1475 SMART AAA_5 645 818 IPR003593 GO:0016887
Vivi1g04484 1475 SUPERFAMILY ABC transporter transmembrane region 915 1209 IPR036640 GO:0005524|GO:0016020
Vivi1g04484 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 841 IPR027417 -
Vivi1g04484 1475 Pfam ABC transporter 636 770 IPR003439 GO:0005524
Vivi1g04484 1475 CDD ABC_6TM_ABCC_D2 911 1204 IPR044726 GO:0140359
Vivi1g04484 1475 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 619 841 IPR003439 GO:0005524
Vivi1g04484 1475 ProSitePatterns ABC transporters family signature. 743 757 IPR017871 GO:0005524|GO:0016887
Vivi1g04484 1475 Gene3D - 594 861 IPR027417 -
Vivi1g04484 1475 FunFam ABC transporter C family member 5 878 1210 - -
Vivi1g04484 1475 CDD ABC_6TM_ABCC_D1 303 590 IPR044746 GO:0140359
Vivi1g04484 1475 SUPERFAMILY ABC transporter transmembrane region 290 595 IPR036640 GO:0005524|GO:0016020
Vivi1g04484 1475 Gene3D - 1213 1464 IPR027417 -
Vivi1g04484 1475 Pfam ABC transporter 1246 1394 IPR003439 GO:0005524
Vivi1g04484 1475 CDD ABCC_MRP_domain2 1227 1447 - -
Vivi1g04484 1475 FunFam ABC transporter C family member 10 285 598 - -
Vivi1g04484 1475 Gene3D ABC transporter type 1, transmembrane domain 878 1210 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04484 Vivi-Chr1 95484264 95489984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04484 613 834 Calmodulin-binding Proteins AT2G36910 27.966 5.02e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04484 K05666 - gmx:100811468 2378.59