Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04474 ATGGCAGAGTTTTTCTCAACCTTCAAACACACTTCTCCCAAATCAGCCTCTAACAGTTTCTTCAGAATTAACATCATCAAAATCTTCATCTCATGGCGGCTACTATGCTCTCAAAATGCTTCAGCAACCGACTTCGGTCCTGACATTTCCAATGTAACCGGAGAAGTTATCGCGGTTTTAGATCAGGCCGGAAGCTTTGGAATTGTGTATGGAAATTCATCTGATGGTGCAGTTTATGTTTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACGCCGTTAACCGTTCTTAGAAGACTTACGCTCGAAGAGAATGGAAATCTGCGGTTGTATCGATGGGAAGACGTAAATGGATCGAAACAATGGGTGTCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAATGGAGTTTGCAAATTGGATAAAACTAAGACTAATGCTTCTTGCACTTGTTTACCAGGAACTTCCAAAGTTGGAAGAGATGGACAGTGTTATGAGAATTCATCTCTTGTTGGAAAATGTACTAATGGAAAAAACGAAAACATGACATCGAATTTTAGAATTTCAACAGTGCAACAAACTAATTATTATTTTTCTGAATCTTCAATAATAGCTAATTATAGTGAGAGTGATGTTTCTTCTGTATCAAAATGCGGCGATGCATGTTTATCAGATTGTGACTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCTTTTTGTTGGGTGTTGAGGAGTTTAAGTTTCGGCGGTTTTGAAGATACGAGCTCGACTTTGTTTGTGAAGATTCGAGCAAATAGTTCGTGGACAGCAGAAGGACAAGGAAGGTCTAATAACAGTTCTTCTAATGGAATGGGGAGTGCTAAGGAAAAGGCTGTGATTATTCCAATTGTTCTAGGCATGATAGTTCTCATTATTTTACTATGTATGTTACTGTATTATAGTGTTCATAGAAAAAAAACTTTGAAAAGAGAGATGGAAAGTTCATTGGTATTATCAGGTGCTCCGGTGAATTTTACTTACCGCGCTTTGCAAATCAGGACAAGCAATTTTTCGCAGCTTCTAGGAACAGGTGGATTTGGAAGTGTGTATAAAGGAAGCTTAGGAGATGGTACCTTAGTCGCGGTGAAGAAACTCGATAAGATTTTGCCTCATGGAGAGAAAGAATTTATCACTGAAGTAAACACGATTGGCTCAATGCATCATATGAATTTGGTTCGTTTATGTGGTTTTTGTTCCGAGGGACCTCAGAGGCTTTTAGTTTACGAGTTTATGAAGAATGGTTCATTGGATCAGTGGATCTTCCCTTCGATTAGAGGGCGAGATAGATTGCTCGATTGGCAAACTCGTTTTGATATAGCCTTAAATACTGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGAAATAAGATAATACATTGTGACATCAAACCAGAAAATATATTGTTAGATGAAAACTTTTGTCCCAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACATTCTCATGTGGTAACAATGGTAAGAGGCACTAGAGGCTATTTGGCGCCAGAATGGGTTAGTAATCGACCGATAACCGTAAAAGCAGATGTTTACAGTTATGGAATGCTTCTTTTAGAAATCATTGGTGGTAGAAGAAATCTTGATTTGTCCTTTGATGAAGAAGATTTCTTCTATCCTGGTTGGGCTTACAAGGAGATGACAAGTGGATCAACAATCAAAGTGGCAGATAGAAGATTAAATGGGGCAGTTGATGAAGAAGAACTAACAAGAGCTTTGAATGTTGCCTTTTGGTGCATCCAAGATGATGTTTCAATGAGACCACCAATGGGAGAAGTCGTGAGAATGCTCGAAGGCCAAGAATCAAATATCATAAATATGCCACCAATGCCACAAACAGTACTAGAGTTAATTGAAGAAGGGTTGGATCATGTCTACAAAGCTATGAAAAGAGAGTATAATCACTATAGCTCATTCACCATTACTAGTCATCTTACATCTCATGCAACATGTAGCAATTCCACAATGTCACCAAGATAG 2091 0.384 MAEFFSTFKHTSPKSASNSFFRINIIKIFISWRLLCSQNASATDFGPDISNVTGEVIAVLDQAGSFGIVYGNSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEENGNLRLYRWEDVNGSKQWVSQWAAVSNPCDIGGICGNGVCKLDKTKTNASCTCLPGTSKVGRDGQCYENSSLVGKCTNGKNENMTSNFRISTVQQTNYYFSESSIIANYSESDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKIRANSSWTAEGQGRSNNSSSNGMGSAKEKAVIIPIVLGMIVLIILLCMLLYYSVHRKKTLKREMESSLVLSGAPVNFTYRALQIRTSNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNLVRLCGFCSEGPQRLLVYEFMKNGSLDQWIFPSIRGRDRLLDWQTRFDIALNTAQGIAYFHEQCRNKIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDLSFDEEDFFYPGWAYKEMTSGSTIKVADRRLNGAVDEEELTRALNVAFWCIQDDVSMRPPMGEVVRMLEGQESNIINMPPMPQTVLELIEEGLDHVYKAMKREYNHYSSFTITSHLTSHATCSNSTMSPR 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04474 696 PANTHER OS07G0415500 PROTEIN 50 648 - -
Vivi1g04474 696 SUPERFAMILY Protein kinase-like (PK-like) 340 636 IPR011009 -
Vivi1g04474 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Vivi1g04474 696 ProSiteProfiles Protein kinase domain profile. 362 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04474 696 SMART serkin_6 362 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04474 696 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 438 646 - -
Vivi1g04474 696 Gene3D Phosphorylase Kinase; domain 1 326 437 - -
Vivi1g04474 696 FunFam serine/threonine-protein kinase PBS1-like 330 437 - -
Vivi1g04474 696 CDD STKc_IRAK 368 636 - -
Vivi1g04474 696 ProSitePatterns Protein kinases ATP-binding region signature. 368 391 IPR017441 GO:0005524
Vivi1g04474 696 Pfam S-locus glycoprotein domain 86 166 IPR000858 GO:0048544
Vivi1g04474 696 Pfam Protein kinase domain 365 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04474 696 Gene3D Transferase(Phosphotransferase) domain 1 438 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04474 Vivi-Chr1 95283555 95286387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04474 345 646 Receptor kinase-like Gene Family AT5G20050 45.570 2.91e-79 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi1g04474 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04474 - - tpra:123904109 1215.68