Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04467 ATGGGAAAAAAGGTTGGGGTTGGAAGTGATCCTAGGTCTAAACAGATTTCTCAGCAGTTTATGGAAGACCTCATGAAACAAGTCATTGATGGAAAGGATAGTGATGTCACATTTGATAACTTTCCTTTTTACTTAAGTGAAAGAATCAAGATTTTGTTGACTAGTGCTGGATATTTTCATTTAAGACAACATGACCTATCCAACCACACAAAGAGCCTTTTGCCCGTAAGCCGAGCTATTTTGCTTTCTGAACCTACCGGTATTTTGCGTACAAATCCTATCTTGTCATGTAAAAATTATGAAGAGCTTTATCATCATATGCTTGCCAAAGCTTTAGCACATTGCTTTGAATCGAAGTTATTGTATCTAGATATGGATTACTTCTCTTTGAAGATGCAGGGCAAAGATGGATGTTCTACAAAAGAACCACATTTAAAAAGGTCCATATTTGAGGCGACTCGGGAGCGTGTGTCTGGTTTGTTTAACCGTTTGCAAAGCATCCCTTCAACAGGTGTGATTAGAGCTGCTAAAGGAACTCCTTCGAAGTGCAAAAGCCGGGACTGTTTTCAAGAAAAGCTTTTTCTATATTCACTCTACAAGGTCTTGGTTTCTATATCACAAACTGATTCTGTTATTTTATACATCAAGAATGTCGAGAAGATCTTTCTTCGATCACCAAGGATGTACAGTTTCTTCAAAAAGCTATTCGATAAAATTTCAGGACCAGTGTTGATACTCGGTTCTAGGTCTGATGATTTAAAAGATGATTGTACAGAAGTCAATGAAAAACTCACTATGTTATTCCCTTACAATATTGAGATTAAGCCGCCTCAGGATAAGGCTCATCTCAAAATCTGGACAGAACAACTAAAAAAGGCCATGGAAAAGACTTCTTTGGAAGATAAAACTACCCGCATTGCTGAAGTGTTTGCAACAAATGACATTGATTGTACTGTCTTGGATTCAATTAGTCGTAGCGACATGATGCTACTTAGTAAACACACCGAAGAGATTGTGGCGTCTTCAATTTTTTATCACTTGAAGAATACTGAAAATCCAGAGTACCGAAATGGAATCCTAACTATATCGGCCACGAGTTTGTGCCATGTATTGAAACTTTTTCAGGAGGGTGAAAGTGGTGAAAAGGATGAAAACAACAATAAGAAAGAGTCAAAAAAGGATGATGCCGGAAAAGGTAAACCTATTTCAAACGGGACAAAAAAAGACAGCGATATTAAAGCTAGTTTGCAGAGTGTTCCTGTTGACAACCCCTACGAGAAATTAATAAGACAAGAGCTTATCCCTGCAAGTGAGATAAAGGTGAATTTTTCAGATATTGGTGCGTTGGATGATGTAAAAGAATCACTTCAAGAAGCGGTTATGCTTCCCCTTAGAAGACCAGATTTTTTCAAAGGCGGAGGGTTATTGAAGCCATGTAAAGGTGTATTGCTTTTTGGACCTCCCGGCACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCTCCGTCTACCATCACTGGTATGTATTACGGACAAAGTGAAAAGAATGTTCGAGCTCTATTTTCATTAGCGGCAAAGGTTGCCCCGACTATTATTTTCATTGATGAAGTAGATAGCTTGCTTGGGAAGCGGACTATGCATGAGCAAAACGTTGTGAGAAGCATTAAAAATGAATTCATGACTCATTGGGATGGACTTTTGTCAAAACCCGATGAGAAAATTATTGTTCTTGGTGCGACCAACATGCCATTTGCCCTTGATGAAGCAGTTATAAGACGGTTTCAGCGCAGGATCATGGTTGGTCTTCCGTCTGCTGAAAACAGGGAAGTGATCTTGAAAACTCTTCTAGCTAAGGAAAAATGTGAAGATATAGACTTCAAAGTGCTTTCAACTATGACAAAAGGATATAGTGGGAGTGATCTTAAGAACTTGTGCATGACTGCAGCATATCGCCCCGTTCAGGAGCTACTGCAACAGGAGAGGGCCAAAGAAATGAAAAAGAAGAAAAAAGAGGCAGAAGCTGAAATCTCAGAAGTCGCCTCCAATGCTACGGAAGAAGATCGAGTGATTGTCCTCAGGCCTTTAAACATGGAAGACATGAGAGATGCAAAGAACAAGGTGACTCCAAGCTTTGCTGAAGAAGGATCAAATATGAGAATGTTAGAGCAATGGAATGATCAGTATGGAGCAGGAGGTTCAAGGAAGAAAAAGAAGGAGCAGCTTAGCTATTTCTTATAG 2268 0.3937 MGKKVGVGSDPRSKQISQQFMEDLMKQVIDGKDSDVTFDNFPFYLSERIKILLTSAGYFHLRQHDLSNHTKSLLPVSRAILLSEPTGILRTNPILSCKNYEELYHHMLAKALAHCFESKLLYLDMDYFSLKMQGKDGCSTKEPHLKRSIFEATRERVSGLFNRLQSIPSTGVIRAAKGTPSKCKSRDCFQEKLFLYSLYKVLVSISQTDSVILYIKNVEKIFLRSPRMYSFFKKLFDKISGPVLILGSRSDDLKDDCTEVNEKLTMLFPYNIEIKPPQDKAHLKIWTEQLKKAMEKTSLEDKTTRIAEVFATNDIDCTVLDSISRSDMMLLSKHTEEIVASSIFYHLKNTENPEYRNGILTISATSLCHVLKLFQEGESGEKDENNNKKESKKDDAGKGKPISNGTKKDSDIKASLQSVPVDNPYEKLIRQELIPASEIKVNFSDIGALDDVKESLQEAVMLPLRRPDFFKGGGLLKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSPSTITGMYYGQSEKNVRALFSLAAKVAPTIIFIDEVDSLLGKRTMHEQNVVRSIKNEFMTHWDGLLSKPDEKIIVLGATNMPFALDEAVIRRFQRRIMVGLPSAENREVILKTLLAKEKCEDIDFKVLSTMTKGYSGSDLKNLCMTAAYRPVQELLQQERAKEMKKKKKEAEAEISEVASNATEEDRVIVLRPLNMEDMRDAKNKVTPSFAEEGSNMRMLEQWNDQYGAGGSRKKKKEQLSYFL 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04467 755 MobiDBLite consensus disorder prediction 379 415 - -
Vivi1g04467 755 Coils Coil 663 692 - -
Vivi1g04467 755 MobiDBLite consensus disorder prediction 741 755 - -
Vivi1g04467 755 SMART AAA_5 478 614 IPR003593 GO:0016887
Vivi1g04467 755 ProSitePatterns AAA-protein family signature. 584 603 IPR003960 GO:0005524|GO:0016887
Vivi1g04467 755 Gene3D - 613 717 - -
Vivi1g04467 755 MobiDBLite consensus disorder prediction 379 407 - -
Vivi1g04467 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 724 IPR027417 -
Vivi1g04467 755 MobiDBLite consensus disorder prediction 734 755 - -
Vivi1g04467 755 Pfam ATPase family associated with various cellular activities (AAA) 482 611 IPR003959 GO:0005524|GO:0016887
Vivi1g04467 755 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 440 615 - -
Vivi1g04467 755 Pfam AAA+ lid domain 633 676 IPR041569 -
Vivi1g04467 755 Gene3D - 440 735 IPR027417 -
Vivi1g04467 755 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 19 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04467 Vivi-Chr1 95156584 95162298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04467 440 716 Calmodulin-binding Proteins AT3G56690 37.544 2.98e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04467 - - mtr:11428492 968.763