Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04456 ATGGATGAAGATTGGGATTTGTTTGCAATAGTTAGAAGTTGTCAATCATCTACAAATAATACTTCAAGCAATAGTACTACACCATCTTCCATTAATTCCACTTGTGATTTCAATGTAGAATTAGAATATGATGCATTTTCTTTTCCCAACAATATAGTGCAACCTATAACCAATGAGATTCAAGAGCTAAACCAATTATTCACATCTTTTAACCCCACCAACACCACTACTACCACTAGTGCTCATGGTATCAATCCCAATTCCCCTACTCATATGGCAAAATGCATTGGACAACAACAACACCATCTTCCCCCTATTACTTCCTCTTCCATTTGGCCTAACTTTGTGCAAGAAGCATCCACTTCTACCTTCAACAATTTCAATAACCAACAACTACAAACATTTCAGAAACAAGAATTTCAAGTACCACAAAGCTTCCAACCTCAAACTCCAAGATCAAGAAAAAGAAAAAGTCAACAAGGAAAAATGGTGTGTCATGTGACAGCAGATAATCTCTCAGCAGATTTGTGGGCATGGAGAAAATATGGACAAAAACCTATTAAAGGTTCTCCATATCCAAGGAACTATTATAGATGTAGCAGTTCCAAAGGTTGTACTGCACGAAAGCAAGTTGAAAGAAGCAACACTGAAGCAGACATGTTTATTGTGACATACACAGGAGATCACAACCATCCAAAACCTACCCACCGGAACTCGCTCGCCGGAAGTACACGAACCAAGTCGCCGACGATACAGCCATCCACTTCAATTTCTTGTCAAGCTAATAACACAAATTCTTCTTCCTCCTCGTTAGGAGCTTCGGTTGAAGAAGAAGAGGATATGGAAGTGGAAATGGAAAGTGATGAGGAAGGTGAAGAAGGTTGTGAATTGTGA 894 0.3904 MDEDWDLFAIVRSCQSSTNNTSSNSTTPSSINSTCDFNVELEYDAFSFPNNIVQPITNEIQELNQLFTSFNPTNTTTTTSAHGINPNSPTHMAKCIGQQQHHLPPITSSSIWPNFVQEASTSTFNNFNNQQLQTFQKQEFQVPQSFQPQTPRSRKRKSQQGKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCTARKQVERSNTEADMFIVTYTGDHNHPKPTHRNSLAGSTRTKSPTIQPSTSISCQANNTNSSSSSLGASVEEEEDMEVEMESDEEGEEGCEL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04456 297 SMART WRKY_cls 173 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g04456 297 FunFam WRKY transcription factor 22 156 227 - -
Vivi1g04456 297 MobiDBLite consensus disorder prediction 139 163 - -
Vivi1g04456 297 MobiDBLite consensus disorder prediction 275 297 - -
Vivi1g04456 297 SUPERFAMILY WRKY DNA-binding domain 168 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g04456 297 MobiDBLite consensus disorder prediction 226 297 - -
Vivi1g04456 297 ProSiteProfiles WRKY domain profile. 168 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g04456 297 Gene3D WRKY domain 157 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g04456 297 MobiDBLite consensus disorder prediction 236 274 - -
Vivi1g04456 297 MobiDBLite consensus disorder prediction 139 154 - -
Vivi1g04456 297 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 288 IPR044810 GO:0003700
Vivi1g04456 297 Pfam WRKY DNA -binding domain 175 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04456 Vivi-Chr1 94940943 94942678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04456 152 253 WRKY Transcription Factor Family AT5G52830 78.431 1.03e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi1g04456 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04456 - - mtr:11414845 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04369 7 113504539 113507116 Vivi1g04456 1 94940943 94942678 ECH
Vivi7g03805 7 103944420 103948721 Vivi1g04456 1 94940943 94942678 ECH
Vivi1g04456 1 94940943 94942678 Vivi1g04456 1 94940943 94942678 ECH