Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04430 ATGGCGGCAGAACTTTCCACTGCCACAACCTTAAAGCCCTACAACATCCTCCAAACCTCAAGCTCTTCCTCTAAAACAACCTCAACAATATTCTTCACCCCCTTAACAAGCTTTCGTCATAAAACACTCCTTAAAACCCAAAGAAGATCAAGAATAACGCCCTTTACCGTTTGTGTTATAATGGAGGATCCAAAACACACAACCCAAATCAACGCAGAAGAAAAAACAGAACTTTCCAATAATAAACCCAACCCTCAATTGCGTCAATTGTCAGTATCACAAAAAATGGCAAGAAAGAAGTCACAAAGGTCCACTTACCTTGTTGCCGCTGTAATGTCTAGCTTTGGTGTTACCTCTATGGCAATCTTAGCAGTTTATTATAGATTTTCATGGCAAATGGAGGGTAGTGGAGAAGTTCCTTGGTCTGAAATGTTTGGCACATTTGCACTCTCAGTGGGTGCTGCTGTAGGTATGGAGTTTTGGGCAAGATGGGCTCATGAGGTTCTATGGCATGCTTCCTTGTGGCACATGCATGAGTCACATCATCGACCAAGAGAAGGTCCATTTGAGCTTAATGATGTTTTTGCAATAATTAACGCTGTTCCTGCAATTGCTCTTCTCTCATACGGTTTTTTCAACAAGGGATTGGTTCCTGGACTCTGTTTTGGTGCAGGTCTTGGGATTACAGTGTTTGGGATTGCTTACATGTTTGTCCATGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCTATTGCTAATGTGCCTTACTTTACAAGAGTTGCTGCTGCTCACCAACTCCATCATTCGGACAAATTCAAAGGGGTGCCATACGGGCTCTTTTTAGGCCCAAAGGAAGTTGAAGAAGTAGGAGGACTAGAAGAGCTAGAGAAAGAGATAAGTAGAAGAACAAGATCATATACTGGTTCATGA 933 0.4234 MAAELSTATTLKPYNILQTSSSSSKTTSTIFFTPLTSFRHKTLLKTQRRSRITPFTVCVIMEDPKHTTQINAEEKTELSNNKPNPQLRQLSVSQKMARKKSQRSTYLVAAVMSSFGVTSMAILAVYYRFSWQMEGSGEVPWSEMFGTFALSVGAAVGMEFWARWAHEVLWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFNKGLVPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIANVPYFTRVAAAHQLHHSDKFKGVPYGLFLGPKEVEEVGGLEELEKEISRRTRSYTGS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04430 310 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 1 307 IPR045019 GO:0016491
Vivi1g04430 310 Pfam Fatty acid hydroxylase 154 281 IPR006694 GO:0005506|GO:0008610|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04430 Vivi-Chr1 94459193 94461678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04430 1 224 Chloroplast and Mitochondria Gene Families AT4G25700 61.062 2.13e-90 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04430 K15746 - gmx:100802778 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05348 2 178081397 178084651 Vivi1g04430 1 94459193 94461678 ECH
Vivi1g04430 1 94459193 94461678 Vivi1g04430 1 94459193 94461678 ECH
Vivi2g05348 2 178081397 178084651 Vivi1g04430 1 94459193 94461678 PCT