LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g04427	ATGAATTTTCTTCACACTCTTCAAGGACCTAAAAAACCAAACCCTTCATTCATGGAGACACATAACCTTATCTTTCTAACCTTTCTCTTCTTTCTACCTTGTTCACTTTCCTTTGTTCCTATAGACAACTACTTGATTAACTGTGGATCACTCAACAATGCTTCACTCTTCAATAGAGTCTTCATGAGTGATTCAACCAACCCAGGCTTGAATTTTCTCTCTTCAGATGATTCCATTTCTCTCATAGACAAAAACCCATCTCCAAATTTGCAAACTTTGTATCATACAGCTAGAGTTTTTGTCACCACTGGGAGATACAGGTTTAATATGAAGAAAAATGGTACTCATTTGATTCGTTTTCATTTCTTTCCATTTAAAGATCAGAGTTTTGACTTGAAGTCTGCAAAATTTAGTGTCTTTGTTAATGGAATTTCGATTATGAGAGATTTTAAGCCACCTGGTGAGGTTCTGATTAAAGAGTTTATTTTGATGATTGAGTCAAACTTGCTTGAAATTTTGTTTAGACCCTTTGATTCAGGTTTTGGATTTGTAAATGCTGTGGAAGTGTTTACTGCTCCTGAAGATTTTGTTATAGATTATGGAACGAGGGTGGTTGGTCCTTCTGGTATGAAAGAGTACCAAAACATTTCATCTCAGGTTTTAGAAACTATTCATAGAATTAATGTTGGAGGTGTGAAAATAACTCCTTTTAATGATACCCTTTGGAGAACTTGGATTCCTGATGAGGATTTTTTGGTTTTTAAGGAAGCAGCTAAACATGCAGTAAGCACTCATACACCCGATTACGAGAAAGGAGGCGTGACTCCGGAGATCGCGCCTGAAAATGTTTACATGACTGCTCAGCAGATGAATAGGGAAAACACAAGTTTAGCTTCAAGGTTTAACATAACATGGAAGTTTCCTGTGGCTTCTGAAGGTGTTCCGCATTTGATTCGGTTGCATTTCTGTGATATAGTTAGTACTTCTCTCAATTTGCTTTACTTTGATGTATATATCAATAGTTACATTGCATATAAGGATCTTGATTTGTCATCACTTACATTTCACACTCTTGCGTCACCGGTGTATGTGGATTTTGTTGCTAATTCGGACGATTCGGGTGTTATTGAAATAAGTGTTGGTCCTTCTGAGCTGAGTAGTTCTATAAGGATTAATGCCATATTGAATGGTGCAGAGATAATGAAGATTGTCAACGATGTCAATAATACTAAGAATGTGCACAGGAGGAAACATTTATGGGTGCTGATAGGTTCAATTGTCGGAGGAATTGTTGTTTTGCTTTTGGTTGTAACTGTTTTTCTACTAGCTACCAAATGCAGGAAGAAGAAACCAAAAGAAACTATGGTGGGAAGTGTTGGATGGACGCCTTTACGTATGTTCGGAGGGAGTTCTCTTAGTAGAACATCCGAACACGGTTCTTATGGATATCTTGGAATGAATATCCCTTTTGCTGATATACAATCAGCAACAAACAATTTCGATAGAAACTTGATTATAGGGTCTGGTGGATTTGGTATGGTTTACAAAGGAGTGCTTAGAGACAATGTAAAAGTTGCTGTCAAGAGAGGTATGCCAGGTTCAAGACAAGGCCTTCCGGAATTCCACTCTGAAATAACGATTTTATCGAAAATTCGTCATCGCCATCTTGTTTCATTAGTTGGTTTCTGTGAAGAAAATTCAGAAATGATACTTGTTTATGAGTATGTTGAAAGAGGTCCATTGAAAAAGCATTTATATGGTTCGTCACGTCAACCACCTCTCAGTTGGAAACAGCGGCTCGAGGTATGCATCGGTGCGGCTAGAGGTTTGCATTATCTTCACACTGGCTTCGCTCAAGGAATCATCCACCGCGACATTAAATCGACCAACATATTGGTCGACGAAGATTACGTGGCAAAGGTTGCTGATTTCGGTCTTTCGAGAGCAGGGCCATGTATCAATGAAACACATGTGAGTACTGGTGTGAAAGGTAGTTTTGGTTACCTTGATCCAGAATATTACCGTAGGCAACAGCTAACCGATAAATCGGATGTGTATTCATTTGGAGTTGTTCTTTTCGAGGTTCTTTGTGGAAGACCTGCTGTTGATCCACAACTGACTAGAGAACAGGTGAATTTAGCAGAATGGGCTATTGAATGGCTGCAGAAGGGAATGCTGGATCATATTGTTGACCCTCATATAGTCAACGAGATCAAACCGAGATCGTTGAAGAAATTTGGCGAAACTGCAGAGAAATGTTTAGCTGAATATGGTGTTGATAGACCAACTATGGGTGATGTCTTGTGGAATTTGGAATATGCACTTCAGCTTCAAGAAAGTGAACCTCAAAGAGGGATACATGACGATAGCGGTGGTAGCGAAGCAGATTATGAAACAACAAGAACTATTCATGAAAACTCTAGCAGCAGAAGAATAGAGAGAAATTATAATAATGATTGTTCAGATATTAGTACTAGCCAAGTGTTTTCCCAGCTCATGAATAATAACGGTAGATGA	2517	0.3858	MNFLHTLQGPKKPNPSFMETHNLIFLTFLFFLPCSLSFVPIDNYLINCGSLNNASLFNRVFMSDSTNPGLNFLSSDDSISLIDKNPSPNLQTLYHTARVFVTTGRYRFNMKKNGTHLIRFHFFPFKDQSFDLKSAKFSVFVNGISIMRDFKPPGEVLIKEFILMIESNLLEILFRPFDSGFGFVNAVEVFTAPEDFVIDYGTRVVGPSGMKEYQNISSQVLETIHRINVGGVKITPFNDTLWRTWIPDEDFLVFKEAAKHAVSTHTPDYEKGGVTPEIAPENVYMTAQQMNRENTSLASRFNITWKFPVASEGVPHLIRLHFCDIVSTSLNLLYFDVYINSYIAYKDLDLSSLTFHTLASPVYVDFVANSDDSGVIEISVGPSELSSSIRINAILNGAEIMKIVNDVNNTKNVHRRKHLWVLIGSIVGGIVVLLLVVTVFLLATKCRKKKPKETMVGSVGWTPLRMFGGSSLSRTSEHGSYGYLGMNIPFADIQSATNNFDRNLIIGSGGFGMVYKGVLRDNVKVAVKRGMPGSRQGLPEFHSEITILSKIRHRHLVSLVGFCEENSEMILVYEYVERGPLKKHLYGSSRQPPLSWKQRLEVCIGAARGLHYLHTGFAQGIIHRDIKSTNILVDEDYVAKVADFGLSRAGPCINETHVSTGVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLCGRPAVDPQLTREQVNLAEWAIEWLQKGMLDHIVDPHIVNEIKPRSLKKFGETAEKCLAEYGVDRPTMGDVLWNLEYALQLQESEPQRGIHDDSGGSEADYETTRTIHENSSSRRIERNYNNDCSDISTSQVFSQLMNNNGR	838

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g04427	838	Gene3D	Phosphorylase Kinase; domain 1	471	575	-	-
	Vivi1g04427	838	SUPERFAMILY	Protein kinase-like (PK-like)	476	772	IPR011009	-
	Vivi1g04427	838	ProSitePatterns	Protein kinases ATP-binding region signature.	506	528	IPR017441	GO:0005524
	Vivi1g04427	838	SMART	serkin_6	500	774	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g04427	838	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	621	633	IPR008271	GO:0004672\|GO:0006468
	Vivi1g04427	838	MobiDBLite	consensus disorder prediction	782	817	-	-
	Vivi1g04427	838	MobiDBLite	consensus disorder prediction	780	818	-	-
	Vivi1g04427	838	PANTHER	OS07G0166700 PROTEIN	487	778	IPR045272	GO:0004714\|GO:0006468
	Vivi1g04427	838	Gene3D	Transferase(Phosphotransferase) domain 1	576	793	-	-
	Vivi1g04427	838	FunFam	Receptor-like protein kinase FERONIA	576	790	-	-
	Vivi1g04427	838	ProSiteProfiles	Protein kinase domain profile.	500	774	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g04427	838	FunFam	Putative receptor-like protein kinase	43	193	-	-
	Vivi1g04427	838	CDD	STKc_IRAK	506	772	-	-
	Vivi1g04427	838	Pfam	Malectin-like domain	46	403	IPR024788	-
	Vivi1g04427	838	FunFam	Receptor-like protein kinase FERONIA	220	405	-	-
	Vivi1g04427	838	Gene3D	-	220	405	-	-
	Vivi1g04427	838	Gene3D	-	43	193	-	-
	Vivi1g04427	838	Pfam	Protein tyrosine and serine/threonine kinase	505	701	IPR001245	GO:0004672\|GO:0006468
	Vivi1g04427	838	FunFam	receptor-like protein kinase FERONIA	468	575	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g04427	Vivi-Chr1	94437205	94440451	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g04427	19	838	Receptor kinase-like Gene Family	AT3G46290	46.509	0.0	726

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vivi1g04427		Malectin_like	3.7e-32	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g04427	-		-	gmx:100801169	1286.17