Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04421 ATGTCTTCACCTGGATTCCCAGGCGGTATGGGACCCTCTGATTTCCACGGCCGAGCAAACAATTTTTCCGGCAGATACAGCACACTTCCGTCCAACATGAATAACTATAACAACAATTTCTCAAACCCAACCACCACCACCTCCACCACCCAGAATTATCATAACCCTTTCTACCGAACCCAACAACAACAACAACAACAACAACCATCGAATTTTATCGACCCTTCTTCACAAATCGCACAAAATCGATCATCAAACCTGATCAGAAGATACCTTGACCCTGCTACCCAAATTGGATATAACCAAATTTCCACACTCAAACGTACACGAACCCTCGCTGAATATCAAACCCAATTCATCAACAACAACAACAACCTTAACAACAACAACAATAACCTTAACAACAACAATACCCTTAACAACAACGTTAGCGACACCCCTCCTACCCACAATTCCGCTAACCTTTATCTTTCAAACCTTGTACTTCATTCTGTAGGAGCTAGAAATTTCCTACAACGTGGTTCTCCTATGTCACCTCTTTCTCCGATGGATTACTCAAATTCATCAACTGAGTCTTCTTCCTCGGCTATTGCCACGCTTCTTCGTTCCAATCCTAGTGCTCAAAACCCAACACCCATGAACTATTCGAATTCGATCCCCCAGAATTCGAATTTTCAATATCAATATTCCAATTTTGCTGAGAATCAAACAACACTCCCTGACCCAGATAAGCAAATGCTGGATGATCAGTTAATGGAGTTGGAAAAACAGCTTCTGGAAGACATTGACGAAGAACATGACCCAAATTGTATGATTGCAAACAGTGAATGGGCTGAGACAATACAAAATTTGATTAACTTGGAGCAAAACCCGATCCAGATACCGGTTTCTTCACCCTGTTCATCCAATAATTCATCTTCTCCCTCTGCTGTTTTACCTGCTGCGTTCTCTTCCAAGCAATGGTTAATGGAAGCCGCTAACGCGATTTCCGAAGGTAAAATCGATACTGCTTCGGAGATCCTGAATCGTTTGGCTTTGACACTGAATCCAGCAGTGAATTCTGATGGTAGATTAACATTCTGTATCATCTCAGCGCTGAATTCCCGCGTGAATCATTTTGATAATCCACCTCCAGTAGCGGAACTGTTCAGTAACGAACACGCTGAGTCTACTCAGCTTCTGTTCGATAATTCTTTCTGCTTCAAGCTCGCTATCATGACTGGTAACGTCGCTATCATCGAAGCTGCATTCGATGAAACAACAGCAGAGAACAGTTACCGCAATATGATGAATCTCTGTGTGGTGGATTTTGATATTGGCCTTGGGAAAAGGTACAAGAGCCTTCTCTATGAGCTACACGCACGGCTCAATGGTTCACCGGCGACGCTGAAGATCACAGCTGTAGTCGATAACATCCACGACGAGAGGTTGAAGATGGTGGAAGAGAGATTGAGTCTACAAGCAGAGCTTTTGAATATCGGGTTTGAATTCAATGTGGTGACACTGAAAATCACCGAGCTGAGTCGCGAGACATTGGGTGTCAACCCAGAGGATATTCTCGCTGTGAACTTCGCGTTCAGACTTTTCAGAGTGGCAGACGAAAGTGTGTCAACTGAGAATCCACGCGATGAGCTTCTCCGGCGCGTGAAGTCACTTTCCCCGCGTGTAGTAACTCTCTTAGAACAAGAGATGAATGCAAACACTGCCCCATTCGTTGCACGTGTGGCTGAGTCATTTTCTTACTACAACGCGCTGTTTGACTCAATTGAGTCAACAGTGGGAAAGGAAAGCTTGGAGAGAGTCAAGATTGAGGAGGGGCTGAGTCGGAAGCTGGGGAACATGATTGCTTGTGAAGGTAGAGATCGCGTGGAGCGGTGTGAAATGTTTGGGAAGTGGCGTGCACGGATGAGTATGGCTGGGTTTATGTTGAACCCGGTGAGTCAGAAAGTAGCTGAGACGATAAAATCGCGACTCGCACCAGGTTGCCGAGTCACTATGAAGGAAGAAAACGGTGGGGTTTTTTTTCGGTGGATGGGAAGGACACTAACCGTCGCATCTGCTTGGTGTTAA 2070 0.4502 MSSPGFPGGMGPSDFHGRANNFSGRYSTLPSNMNNYNNNFSNPTTTTSTTQNYHNPFYRTQQQQQQQQPSNFIDPSSQIAQNRSSNLIRRYLDPATQIGYNQISTLKRTRTLAEYQTQFINNNNNLNNNNNNLNNNNTLNNNVSDTPPTHNSANLYLSNLVLHSVGARNFLQRGSPMSPLSPMDYSNSSTESSSSAIATLLRSNPSAQNPTPMNYSNSIPQNSNFQYQYSNFAENQTTLPDPDKQMLDDQLMELEKQLLEDIDEEHDPNCMIANSEWAETIQNLINLEQNPIQIPVSSPCSSNNSSSPSAVLPAAFSSKQWLMEAANAISEGKIDTASEILNRLALTLNPAVNSDGRLTFCIISALNSRVNHFDNPPPVAELFSNEHAESTQLLFDNSFCFKLAIMTGNVAIIEAAFDETTAENSYRNMMNLCVVDFDIGLGKRYKSLLYELHARLNGSPATLKITAVVDNIHDERLKMVEERLSLQAELLNIGFEFNVVTLKITELSRETLGVNPEDILAVNFAFRLFRVADESVSTENPRDELLRRVKSLSPRVVTLLEQEMNANTAPFVARVAESFSYYNALFDSIESTVGKESLERVKIEEGLSRKLGNMIACEGRDRVERCEMFGKWRARMSMAGFMLNPVSQKVAETIKSRLAPGCRVTMKEENGGVFFRWMGRTLTVASAWC 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04421 689 MobiDBLite consensus disorder prediction 1 53 - -
Vivi1g04421 689 MobiDBLite consensus disorder prediction 20 53 - -
Vivi1g04421 689 Pfam GRAS domain family 320 688 IPR005202 -
Vivi1g04421 689 Coils Coil 244 264 - -
Vivi1g04421 689 ProSiteProfiles GRAS family profile. 309 689 IPR005202 -
Vivi1g04421 689 Coils Coil 116 136 - -
Vivi1g04421 689 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 250 667 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04421 Vivi-Chr1 94262182 94264793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04421 251 688 GRAS Transcription Factor Family AT5G52510 50.649 8.05e-124 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi1g04421 GRAS 1.1e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04421 - - tpra:123914170 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04421 1 94262182 94264793 Vivi1g04421 1 94262182 94264793 ECH
Vivi2g05335 2 177976869 177979195 Vivi1g04421 1 94262182 94264793 PCT