Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04408 ATGCCAGTTGCAAAACTTACTGCTTCAGGTACTCCCAATTTTATGAAACCAGAAGATGGAAATGATTCTTTGGATGCGTTAATCAGACAAGCAATTGGGTGGCCTGTGTTTTCTCCTGCGAAGGTTCAGATATTAAAGTGTGACAAGTGTACCAAAGAGTTCTGCTCACCAATTAATTATAGAAGACATAAACGTGTACACCATCGGTTGAAAAAGCTTGATAAGGACTCTAAGAAAAATAGGGATCTTTTACAGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTGTCATTTAAGAATGTAATGCTGGAGGAGGTTCCGGGGTCTTCAGTTTTGCAAGCTCTCTCAACTCTTAGAACACAACAAGGATTCTATTCTTTTCCACATGGCTACCTCAGAGCTGGTTTTGCCCTTTTGGATATTGTTCAATCCAGGCCTTCTAGTTTCCCTATATCTTCACAGAAGCTGTTCGATATTCTTGATGATTCCAGTGAAAAAACTTTTTTGTGTGGAACAGCAGTGTCAATGCAAAGACATGTTTTTGATGGAGAAGCTGGAAAAATTGGCCTTGAACCCAAAAATCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGTAAAGGCATGGCTCGCAGACAAGGACGCTGAAGCATTGAGATGCCAGAAGCTGCTGATGGAGGAGGAGGAAGCTGCTCAGAGAAGACAAGCCGAGATTTTGGAGAGAAAACGCCAGAAAAAGCTTAGGCACAAAGAACAGAAGGCACGGAGCCGACCTGAAAATGACACAGAAATTAAAGAGAGCATTAGCAGCACAGGAGATAATGTATCACCAGAGGAAGCATCTTTGGCTGCATGTGACTTTGAAGCACATAGAGCAGATGTAGTTGTCGATTATGCTTCACCTCTTGTAACTTATCCCTGCCCAGATACCAATGAATGTGTAGACTTGGATACAAAGTCAGGATTTCATTGTGACACTGATCAGAATGTGGAGCAGTGGACATCCCAAAGGGATGCACAACCAGGTTATGATTGTGACACTGATCGGAATTTAGAGAGACAGACATTACACAGACATAATCCTCGGCGCACAGCAGCTGCTAGACGGCAAGGGCTGCCTAAGTCACAACGTACGATTGCCAATGGTTTGTATGCAAACCCGAACTCTCAGAAGTCTAAGTTTGGAGTCAATCCAAAATATGGAACCAACCGTGATCAGAGGGCTGCTCCTATAGTTAACGGTGGTAAAGTTTGGAGCCGGAAGCCTAAACCAGAAACAGATGCAGTGGTTATGAAAGCCAGACTGCATAAAGAGCCAGACAAAATTAAGAATCATGAGGTTTTGATAGGATCTGTATCTGTTACACTGGCCAATTGCAGCCAATCAGAGGGTAATCTTGTCACGTCCCAAGCAAACAGCTTAGTAGATAATTTGGCTGACCAGAGTATTGCTCAGGAGAAGCCAATTAAACCGGACTCCTTTCAGGGAGGCAACAATCGATCAAGAAGTAAGCTTTGGAGACCGGTTAACCTGCACGGAACTAAAAATCCGCTGCCACTCCAAAGTGTTGAGACAGAAGTTGATGGAAAAGATGATCAAAATTTGTCTGTTCAGAGTAGTTTAAGGTCGTGTAATATAGATGGATGTGATATTAGTTCTGGCAACAAATCTAATGTTGGGGATAAAGCAGATATAGAAAATATTCACTTTTCCAGCCATGCTGCAAAAGCCTTTCTTGCAAAAAGATGGAAAGAAGCAATTTCATCACCTCATGTGGAGTTGGTTATTTCACCTGATTCTGAACTTCCTGGGTTACAGCCGGTCATGGAATGTGAGCCAGCGCCGTGTCGATCTTCTAATACAGAGAGATGCAGCGTTCTTGCAAATACAGAGAACTGGTTGCCGGCAACCTCTGGAGTTGCTAAATCGAAATCCAGAATCAAGTCGGAGAAGGGAATAAAGATAAAGTACATTCCAAAACTAAAAGCTGCATCATAA 2016 0.4271 MPVAKLTASGTPNFMKPEDGNDSLDALIRQAIGWPVFSPAKVQILKCDKCTKEFCSPINYRRHKRVHHRLKKLDKDSKKNRDLLQAYWDKLSVEEAKEVVSFKNVMLEEVPGSSVLQALSTLRTQQGFYSFPHGYLRAGFALLDIVQSRPSSFPISSQKLFDILDDSSEKTFLCGTAVSMQRHVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLMEEEEAAQRRQAEILERKRQKKLRHKEQKARSRPENDTEIKESISSTGDNVSPEEASLAACDFEAHRADVVVDYASPLVTYPCPDTNECVDLDTKSGFHCDTDQNVEQWTSQRDAQPGYDCDTDRNLERQTLHRHNPRRTAAARRQGLPKSQRTIANGLYANPNSQKSKFGVNPKYGTNRDQRAAPIVNGGKVWSRKPKPETDAVVMKARLHKEPDKIKNHEVLIGSVSVTLANCSQSEGNLVTSQANSLVDNLADQSIAQEKPIKPDSFQGGNNRSRSKLWRPVNLHGTKNPLPLQSVETEVDGKDDQNLSVQSSLRSCNIDGCDISSGNKSNVGDKADIENIHFSSHAAKAFLAKRWKEAISSPHVELVISPDSELPGLQPVMECEPAPCRSSNTERCSVLANTENWLPATSGVAKSKSRIKSEKGIKIKYIPKLKAAS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04408 671 MobiDBLite consensus disorder prediction 388 405 - -
Vivi1g04408 671 MobiDBLite consensus disorder prediction 246 281 - -
Vivi1g04408 671 Coils Coil 228 248 - -
Vivi1g04408 671 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 33 669 - -
Vivi1g04408 671 MobiDBLite consensus disorder prediction 491 510 - -
Vivi1g04408 671 ProSitePatterns Zinc finger C2H2 type domain signature. 47 68 IPR013087 -
Vivi1g04408 671 SMART c2h2final6 45 67 IPR013087 -
Vivi1g04408 671 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Vivi1g04408 671 MobiDBLite consensus disorder prediction 388 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04408 Vivi-Chr1 94053080 94059114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04408 18 666 C2H2 Transcription Factor Family AT4G25610 39.105 7.87e-124 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g04408 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04408 - - vvo:131643571 1322.38