Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04407 ATGCCAGTTGCAAAACTTACTGCTTCAGGTACTCCCAATTTTATGAAACCAGAAGATGGAAATGATTCTTTGGATGCGTTAATCAGACAAGCAATTGAAATTCCAGGGTGGCCTGTGTTTTCTCCTGCGAAGGTTCAGATATTAAAGTGTGACAAGTGTACCAAAGAGTTCTGCTCACCAATTAATTATAGAAGACATAAACGTGTACACCATCGGTTGAAAAAGCTTGATAAGGACTCTAAGAAAAATAGGGATCTTTTACAGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTGTCATTTAAGAATGTAATGCTGGAGGAGGTTCCGGGGTCTTCAGTTTTGCAAGCTCTCTCAACTCTTAGAACACAACAAGGATTCTATTCTTTTCCACATGGCTACCTCAGAGCTGGTTTTGCCCTTTTGGATATTGTTCAATCCAGGCCTTCTAGTTTCCCTATATCTTCACAGAAGCTGTTCGATATTCTTGATGATTCCAGTGAAAAAACTTTTTTGTGTGGAACAGCAGTGTCAATGCAAAGACATGTTTTTGATGGAGAAGCTGGAAAAATTGGCCTTGAACCCAAAAATCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGTAAAGGCATGGCTCGCAGACAAGGACGCTGAAGCATTGAGATGCCAGAAGCTGCTGATGGAGGAGGAGGAAGCTGCTCAGAGAAGACAAGCCGAGATTTTGGAGAGAAAACGCCAGAAAAAGCTTAGGCACAAAGAACAGAAGGCACGGAGCCGACCTGAAAATGACACAGAAATTAAAGAGAGCATTAGCAGCACAGGAGATAATGTATCACCAGAGGAAGCATCTTTGGCTGCATGTGACTTTGAAGCACATAGAGCAGATGTAGTTGTCGATTATGCTTCACCTCTTGTAACTTATCCCTGCCCAGATACCAATGAATGTGTAGACTTGGATACAAAGTCAGGATTTCATTGTGACACTGATCAGAATGTGGAGCAGTGGACATCCCAAAGGGATGCACAACCAGGTTATGATTGTGACACTGATCGGAATTTAGAGAGACAGACATTACACAGACATAATCCTCGGCGCACAGCAGCTGCTAGACGGCAAGGGCTGCCTAAGTCACAACGTACGATTGCCAATGGTTTGTATGCAAACCCGAACTCTCAGAAGTCTAAGTTTGGAGTCAATCCAAAATATGGAACCAACCGTGATCAGAGGGCTGCTCCTATAGTTAACGGTGGTAAAGTTTGGAGCCGGAAGCCTAAACCAGAAACAGATGCAGTGGTTATGAAAGCCAGACTGCATAAAGAGCCAGACAAAATTAAGAATCATGAGGTTTTGATAGGATCTGTATCTGTTACACTGGCCAATTGCAGCCAATCAGAGGGTAATCTTGTCACGTCCCAAGCAAACAGCTTAGTAGATAATTTGGCTGACCAGAGTATTGCTCAGGAGAAGCCAATTAAACCGGACTCCTTTCAGGGAGGCAACAATCGATCAAGAAGTAAGCTTTGGAGACCGGTTAACCTGCACGGAACTAAAAATCCGCTGCCACTCCAAAGTGTTGAGACAGAAGTTGATGGAAAAGATGATCAAAATTTGTCTGTTCAGAGTAGTTTAAGGTCGTGTAATATAGATGGATGTGATATTAGTTCTGGCAACAAATCTAATGTTGGGGATAAAGCAGATATAGAAAATATTCACTTTTCCAGCCATGCTGCAAAAGCCTTTCTTGCAAAAAGATGGAAAGAAGCAATTTCATCACCTCATGTGGAGTTGGTTATTTCACCTGATTCTGAACTTCCTGGGTTACAGCCGGTCATGGAATGTGAGCCAGCGCCGTGTCGATCTTCTAATACAGAGAGATGCAGCGTTCTTGCAAATACAGAGAACTGGTTGCCGGCAACCTCTGGAGTTGCTAAATCGAAATCCAGAATCAAGTCGGAGAAGGGAATAAAGATAAAGTACATTCCAAAACTAAAAGCTGCATCATAA 2025 0.4267 MPVAKLTASGTPNFMKPEDGNDSLDALIRQAIEIPGWPVFSPAKVQILKCDKCTKEFCSPINYRRHKRVHHRLKKLDKDSKKNRDLLQAYWDKLSVEEAKEVVSFKNVMLEEVPGSSVLQALSTLRTQQGFYSFPHGYLRAGFALLDIVQSRPSSFPISSQKLFDILDDSSEKTFLCGTAVSMQRHVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLMEEEEAAQRRQAEILERKRQKKLRHKEQKARSRPENDTEIKESISSTGDNVSPEEASLAACDFEAHRADVVVDYASPLVTYPCPDTNECVDLDTKSGFHCDTDQNVEQWTSQRDAQPGYDCDTDRNLERQTLHRHNPRRTAAARRQGLPKSQRTIANGLYANPNSQKSKFGVNPKYGTNRDQRAAPIVNGGKVWSRKPKPETDAVVMKARLHKEPDKIKNHEVLIGSVSVTLANCSQSEGNLVTSQANSLVDNLADQSIAQEKPIKPDSFQGGNNRSRSKLWRPVNLHGTKNPLPLQSVETEVDGKDDQNLSVQSSLRSCNIDGCDISSGNKSNVGDKADIENIHFSSHAAKAFLAKRWKEAISSPHVELVISPDSELPGLQPVMECEPAPCRSSNTERCSVLANTENWLPATSGVAKSKSRIKSEKGIKIKYIPKLKAAS 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04407 674 ProSitePatterns Zinc finger C2H2 type domain signature. 50 71 IPR013087 -
Vivi1g04407 674 MobiDBLite consensus disorder prediction 494 513 - -
Vivi1g04407 674 SMART c2h2final6 48 70 IPR013087 -
Vivi1g04407 674 MobiDBLite consensus disorder prediction 391 432 - -
Vivi1g04407 674 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 672 - -
Vivi1g04407 674 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Vivi1g04407 674 MobiDBLite consensus disorder prediction 249 284 - -
Vivi1g04407 674 MobiDBLite consensus disorder prediction 391 408 - -
Vivi1g04407 674 Coils Coil 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04407 Vivi-Chr1 94053080 94059114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04407 18 669 C2H2 Transcription Factor Family AT4G25610 39.394 1.54e-125 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g04407 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04407 - - vvo:131643571 1329.69