Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04406 ATGCCAGTTGCAAAACTTACTGCTTCAGGTACTCCCAATTTTATGAAACCAGAAGATGGAAATGATTCTTTGGATGCGTTAATCAGACAAGCAATTGGTAAAGAATCTTTCCTTTCCTACCCTAGGGCTGGTGAAAGACCAGCACAGTGGATTCAATTGTTTCATGCTTTAGAACAGCAGCAAGGGTGGCCTGTGTTTTCTCCTGCGAAGGTTCAGATATTAAAGTGTGACAAGTGTACCAAAGAGTTCTGCTCACCAATTAATTATAGAAGACATAAACGTGTACACCATCGGTTGAAAAAGCTTGATAAGGACTCTAAGAAAAATAGGGATCTTTTACAGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTGTCATTTAAGAATGTAATGCTGGAGGAGGTTCCGGGGTCTTCAGTTTTGCAAGCTCTCTCAACTCTTAGAACACAACAAGGATTCTATTCTTTTCCACATGGCTACCTCAGAGCTGGTTTTGCCCTTTTGGATATTGTTCAATCCAGGCCTTCTAGTTTCCCTATATCTTCACAGAAGCTGTTCGATATTCTTGATGATTCCAGTGAAAAAACTTTTTTGTGTGGAACAGCAGTGTCAATGCAAAGACATGTTTTTGATGGAGAAGCTGGAAAAATTGGCCTTGAACCCAAAAATCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGTAAAGGCATGGCTCGCAGACAAGGACGCTGAAGCATTGAGATGCCAGAAGCTGCTGATGGAGGAGGAGGAAGCTGCTCAGAGAAGACAAGCCGAGATTTTGGAGAGAAAACGCCAGAAAAAGCTTAGGCACAAAGAACAGAAGGCACGGAGCCGACCTGAAAATGACACAGAAATTAAAGAGAGCATTAGCAGCACAGGAGATAATGTATCACCAGAGGAAGCATCTTTGGCTGCATGTGACTTTGAAGCACATAGAGCAGATGTAGTTGTCGATTATGCTTCACCTCTTGTAACTTATCCCTGCCCAGATACCAATGAATGTGTAGACTTGGATACAAAGTCAGGATTTCATTGTGACACTGATCAGAATGTGGAGCAGTGGACATCCCAAAGGGATGCACAACCAGGTTATGATTGTGACACTGATCGGAATTTAGAGAGACAGACATTACACAGACATAATCCTCGGCGCACAGCAGCTGCTAGACGGCAAGGGCTGCCTAAGTCACAACGTACGATTGCCAATGGTTTGTATGCAAACCCGAACTCTCAGAAGTCTAAGTTTGGAGTCAATCCAAAATATGGAACCAACCGTGATCAGAGGGCTGCTCCTATAGTTAACGGTGGTAAAGTTTGGAGCCGGAAGCCTAAACCAGAAACAGATGCAGTGGTTATGAAAGCCAGACTGCATAAAGAGCCAGACAAAATTAAGAATCATGAGGTTTTGATAGGATCTGTATCTGTTACACTGGCCAATTGCAGCCAATCAGAGGGTAATCTTGTCACGTCCCAAGCAAACAGCTTAGTAGATAATTTGGCTGACCAGAGTATTGCTCAGGAGAAGCCAATTAAACCGGACTCCTTTCAGGGAGGCAACAATCGATCAAGAAGTAAGCTTTGGAGACCGGTTAACCTGCACGGAACTAAAAATCCGCTGCCACTCCAAAGTGTTGAGACAGAAGTTGATGGAAAAGATGATCAAAATTTGTCTGTTCAGAGTAGTTTAAGGTCGTGTAATATAGATGGATGTGATATTAGTTCTGGCAACAAATCTAATGTTGGGGATAAAGCAGATATAGAAAATATTCACTTTTCCAGCCATGCTGCAAAAGCCTTTCTTGCAAAAAGATGGAAAGAAGCAATTTCATCACCTCATGTGGAGTTGGTTATTTCACCTGATTCTGAACTTCCTGGGTTACAGCCGGTCATGGAATGTGAGCCAGCGCCGTGTCGATCTTCTAATACAGAGAGATGCAGCGTTCTTGCAAATACAGAGAACTGGTTGCCGGCAACCTCTGGAGTTGCTAAATCGAAATCCAGAATCAAGTCGGAGAAGGGAATAAAGATAAAGTACATTCCAAAACTAAAAGCTGCATCATAA 2103 0.4275 MPVAKLTASGTPNFMKPEDGNDSLDALIRQAIGKESFLSYPRAGERPAQWIQLFHALEQQQGWPVFSPAKVQILKCDKCTKEFCSPINYRRHKRVHHRLKKLDKDSKKNRDLLQAYWDKLSVEEAKEVVSFKNVMLEEVPGSSVLQALSTLRTQQGFYSFPHGYLRAGFALLDIVQSRPSSFPISSQKLFDILDDSSEKTFLCGTAVSMQRHVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLMEEEEAAQRRQAEILERKRQKKLRHKEQKARSRPENDTEIKESISSTGDNVSPEEASLAACDFEAHRADVVVDYASPLVTYPCPDTNECVDLDTKSGFHCDTDQNVEQWTSQRDAQPGYDCDTDRNLERQTLHRHNPRRTAAARRQGLPKSQRTIANGLYANPNSQKSKFGVNPKYGTNRDQRAAPIVNGGKVWSRKPKPETDAVVMKARLHKEPDKIKNHEVLIGSVSVTLANCSQSEGNLVTSQANSLVDNLADQSIAQEKPIKPDSFQGGNNRSRSKLWRPVNLHGTKNPLPLQSVETEVDGKDDQNLSVQSSLRSCNIDGCDISSGNKSNVGDKADIENIHFSSHAAKAFLAKRWKEAISSPHVELVISPDSELPGLQPVMECEPAPCRSSNTERCSVLANTENWLPATSGVAKSKSRIKSEKGIKIKYIPKLKAAS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04406 700 MobiDBLite consensus disorder prediction 520 539 - -
Vivi1g04406 700 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
Vivi1g04406 700 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g04406 700 MobiDBLite consensus disorder prediction 417 458 - -
Vivi1g04406 700 Coils Coil 257 277 - -
Vivi1g04406 700 SMART c2h2final6 74 96 IPR013087 -
Vivi1g04406 700 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 698 - -
Vivi1g04406 700 ProSitePatterns Zinc finger C2H2 type domain signature. 76 97 IPR013087 -
Vivi1g04406 700 MobiDBLite consensus disorder prediction 275 310 - -
Vivi1g04406 700 MobiDBLite consensus disorder prediction 417 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04406 Vivi-Chr1 94053080 94059114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04406 18 695 C2H2 Transcription Factor Family AT4G25610 41.066 1.10e-138 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g04406 None None None