Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04404 ATGCCAGTTGCAAAACTTACTGCTTCAGGTACTCCCAATTTTATGAAACCAGAAGATGGAAATGATTCTTTGGATGCGTTAATCAGACAAGCAATTGGTAAAGAATCTTTCCTTTCCTACCCTAGGGCTGGTGAAAGACCAGCACAGTGGATTCAATTGTTTCATGCTTTAGAACAGCAGCAAGAAATTCCAGGGTGGCCTGTGTTTTCTCCTGCGAAGGTTCAGATATTAAAGTGTGACAAGTGTACCAAAGAGTTCTGCTCACCAATTAATTATAGAAGACATAAACGTGTACACCATCGGTTGAAAAAGCTTGATAAGGACTCTAAGAAAAATAGGGATCTTTTACAGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTGTCATTTAAGAATGTAATGCTGGAGGAGGTTCCGGGGTCTTCAGTTTTGCAAGCTCTCTCAACTCTTAGAACACAACAAGGATTCTATTCTTTTCCACATGGCTACCTCAGAGCTGGTTTTGCCCTTTTGGATATTGTTCAATCCAGGCCTTCTAGTTTCCCTATATCTTCACAGAAGCTGTTCGATATTCTTGATGATTCCAGTGAAAAAACTTTTTTGTGTGGAACAGCAGTGTCAATGCAAAGACATGTTTTTGATGGAGAAGCTGGAAAAATTGGCCTTGAACCCAAAAATCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGTAAAGGCATGGCTCGCAGACAAGGACGCTGAAGCATTGAGATGCCAGAAGCTGCTGATGGAGGAGGAGGAAGCTGCTCAGAGAAGACAAGCCGAGATTTTGGAGAGAAAACGCCAGAAAAAGCTTAGGCACAAAGAACAGAAGGCACGGAGCCGACCTGAAAATGACACAGAAATTAAAGAGAGCATTAGCAGCACAGGAGATAATGTATCACCAGAGGAAGCATCTTTGGCTGCATGTGACTTTGAAGCACATAGAGCAGATGTAGTTGTCGATTATGCTTCACCTCTTGTAACTTATCCCTGCCCAGATACCAATGAATGTGTAGACTTGGATACAAAGTCAGGATTTCATTGTGACACTGATCAGAATGTGGAGCAGTGGACATCCCAAAGGGATGCACAACCAGGTTATGATTGTGACACTGATCGGAATTTAGAGAGACAGACATTACACAGACATAATCCTCGGCGCACAGCAGCTGCTAGACGGCAAGGGCTGCCTAAGTCACAACGTACGATTGCCAATGGTTTGTATGCAAACCCGAACTCTCAGAAGTCTAAGTTTGGAGTCAATCCAAAATATGGAACCAACCGTGATCAGAGGGCTGCTCCTATAGTTAACGGTGGTAAAGTTTGGAGCCGGAAGCCTAAACCAGAAACAGATGCAGTGGTTATGAAAGCCAGACTGCATAAAGAGCCAGACAAAATTAAGAATCATGAGGTTTTGATAGGATCTGTATCTGTTACACTGGCCAATTGCAGCCAATCAGAGGGTAATCTTGTCACGTCCCAAGCAAACAGCTTAGTAGATAATTTGGCTGACCAGAGTATTGCTCAGGAGAAGCCAATTAAACCGGACTCCTTTCAGGGAGGCAACAATCGATCAAGAAGTAAGCTTTGGAGACCGGTTAACCTGCACGGAACTAAAAATCCGCTGCCACTCCAAAGTGTTGAGACAGAAGTTGATGGAAAAGATGATCAAAATTTGTCTGTTCAGAGTAGTTTAAGGTCGTGTAATATAGATGGATGTGATATTAGTTCTGGCAACAAATCTAATGTTGGGGATAAAGCAGATATAGAAAATATTCACTTTTCCAGCCATGCTGCAAAAGCCTTTCTTGCAAAAAGATGGAAAGAAGCAATTTCATCACCTCATGTGGAGTTGGTTATTTCACCTGATTCTGAACTTCCTGGGTTACAGCCGGTCATGGAATGTGAGCCAGCGCCGTGTCGATCTTCTAATACAGAGAGATGCAGCGTTCTTGCAAATACAGAGAACTGGTTGCCGGCAACCTCTGGAGTTGCTAAATCGAAATCCAGAATCAAGTCGGAGAAGGGAATAAAGATAAAGTACATTCCAAAACTAAAAGCTGCATCATAA 2112 0.4271 MPVAKLTASGTPNFMKPEDGNDSLDALIRQAIGKESFLSYPRAGERPAQWIQLFHALEQQQEIPGWPVFSPAKVQILKCDKCTKEFCSPINYRRHKRVHHRLKKLDKDSKKNRDLLQAYWDKLSVEEAKEVVSFKNVMLEEVPGSSVLQALSTLRTQQGFYSFPHGYLRAGFALLDIVQSRPSSFPISSQKLFDILDDSSEKTFLCGTAVSMQRHVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLMEEEEAAQRRQAEILERKRQKKLRHKEQKARSRPENDTEIKESISSTGDNVSPEEASLAACDFEAHRADVVVDYASPLVTYPCPDTNECVDLDTKSGFHCDTDQNVEQWTSQRDAQPGYDCDTDRNLERQTLHRHNPRRTAAARRQGLPKSQRTIANGLYANPNSQKSKFGVNPKYGTNRDQRAAPIVNGGKVWSRKPKPETDAVVMKARLHKEPDKIKNHEVLIGSVSVTLANCSQSEGNLVTSQANSLVDNLADQSIAQEKPIKPDSFQGGNNRSRSKLWRPVNLHGTKNPLPLQSVETEVDGKDDQNLSVQSSLRSCNIDGCDISSGNKSNVGDKADIENIHFSSHAAKAFLAKRWKEAISSPHVELVISPDSELPGLQPVMECEPAPCRSSNTERCSVLANTENWLPATSGVAKSKSRIKSEKGIKIKYIPKLKAAS 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04404 703 Coils Coil 260 280 - -
Vivi1g04404 703 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Vivi1g04404 703 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g04404 703 ProSitePatterns Zinc finger C2H2 type domain signature. 79 100 IPR013087 -
Vivi1g04404 703 MobiDBLite consensus disorder prediction 420 437 - -
Vivi1g04404 703 MobiDBLite consensus disorder prediction 278 313 - -
Vivi1g04404 703 MobiDBLite consensus disorder prediction 523 542 - -
Vivi1g04404 703 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 701 - -
Vivi1g04404 703 SMART c2h2final6 77 99 IPR013087 -
Vivi1g04404 703 MobiDBLite consensus disorder prediction 420 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04404 Vivi-Chr1 94053080 94059114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04404 18 698 C2H2 Transcription Factor Family AT4G25610 41.033 1.36e-139 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g04404 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04404 - - vvo:131643571 1404.81