Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04403 ATGGGAGCAGCTGCAGACAGACAGAAGTTGAGGTTAGATAGTGAAGACACACCTGTAATAGAGACTGCCCCTGTATTATTGATGCTCGACTCGAATATGGAAGCCAAACAATCTGAAAAAATTAAATCACAATTGATTCCGGATGTATTGAAATATTTAGATTCTGGTTATACGGAAGAGACCAAAAATATCAATTCCCACTGCTCTTTAAATGCAGAATGGTCCTTTAACAGTGTTATTGCAAGGACAAAGTTGACAGATTTGCTTATTCATGAGGATGATGAAGCATTACAAAACTGGTGTGCTAAGGAGTTAACTAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAGCAAGACGTACAAGAAATGAAGAATCAGCGAGATAAAATCGTAAGCGAATTGCAAATGCTCGAAGACCGGATTTCAGCTCTTAGAAACCAATTGTTTGAGTCCGAGTGTTCGGCAACTGAGTTGGAAGAGAAGATTTTATTAGCTGTGGATCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTGAGGATAGAACATGCAAATGCAGTTAAGAAAGTTGAAATGCTGAAAAAATTTGGAGAAGTGGATACTACATCCTCTTATGTGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAATTGTGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCTTGTTGCCATAAAAATGCTACCCTCTTATGGTTGTCTGAACCAATTTGAGTTCCAACATCAGGTTGAGGTTTTAAGTAGAATAAGACATCCAAACCTGTTAACTTTAATTGGAAGCTGTGCAGAGTCTAAGACACTTGTGTATGAATACCTAAACAATGGTAGCCTTGAAAGTCATCTTGCATGCAAAGACAAGACTCCACTTCCATGGCAAATTCGAATGTCCATTGCTACTGACATATGCTCTGCTTTAATCTTCCTTCACTCAAGTGAGCCTTGTATTGTCCATGGGAATCTGAAGCCTAGTAAGGTTCTGCTTGATGCTAATTTTGTTGCCAAACTTGGTGATTTGGGGATTCCTTCTTTAGTCAAGCATGGTGTGGATTCAGCTGACACTGGGACAGTAGTATATAACAACTCACATAAAGGTTTGGTGTATGTGGATCCAGAGTATCTTGATACTGGTAAACTGACACCGGAGTCAGATGTGTATTCATTTGGAATCATACTCTTACAACTTCTAACTGGAAGACCACTTTTGGGGCTAGTTAGAGATATGAAATGTGCATTGGAAAAAGAAAATCTTAAAACTGTGTTGGACTTTTCAGCCGGTGAATGGCCACTTCATCAAACCACACAAATGGCATGTTTAGCATTAAGGTGTTGTGAGAAGAATTGGCTGAACCGGCCAGATCTTGTATCAGAAGTCTGGAGTGTTCTTAAACCATTCAGAACTATTTGCATAAACAGGAGACAGGAGTTGACTTCTAAGAAGCTTCAACGAGCCCCTTCTCACTTTGTCTGCCCCATTGTCCAGGAAGTTATGGAAGATCCCTACATTGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGGGGATGGTTGGACAGTGGTCACAACACTTCCCCTATGACAAACCTCAAGCTGGAACATACAGATTTGGTACCTAATTATGCATTACATAATGCCATTCGGGAGTGGCAGCAACAGTGA 1740 0.4 MGAAADRQKLRLDSEDTPVIETAPVLLMLDSNMEAKQSEKIKSQLIPDVLKYLDSGYTEETKNINSHCSLNAEWSFNSVIARTKLTDLLIHEDDEALQNWCAKELTRRKEVEEQLAREKQDVQEMKNQRDKIVSELQMLEDRISALRNQLFESECSATELEEKILLAVDLLISFKEKRDKLRIEHANAVKKVEMLKKFGEVDTTSSYVVEFPAFSFMEINEATHDFDQSWKIGEGNCGSVYKGLLRNMLVAIKMLPSYGCLNQFEFQHQVEVLSRIRHPNLLTLIGSCAESKTLVYEYLNNGSLESHLACKDKTPLPWQIRMSIATDICSALIFLHSSEPCIVHGNLKPSKVLLDANFVAKLGDLGIPSLVKHGVDSADTGTVVYNNSHKGLVYVDPEYLDTGKLTPESDVYSFGIILLQLLTGRPLLGLVRDMKCALEKENLKTVLDFSAGEWPLHQTTQMACLALRCCEKNWLNRPDLVSEVWSVLKPFRTICINRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHNTSPMTNLKLEHTDLVPNYALHNAIREWQQQ 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04403 579 SUPERFAMILY RING/U-box 507 579 - -
Vivi1g04403 579 Gene3D Phosphorylase Kinase; domain 1 197 298 - -
Vivi1g04403 579 CDD RING-Ubox_WDSUB1-like 511 566 - -
Vivi1g04403 579 SMART Ubox_2 513 576 IPR003613 GO:0004842|GO:0016567
Vivi1g04403 579 Gene3D Transferase(Phosphotransferase) domain 1 299 494 - -
Vivi1g04403 579 SUPERFAMILY Protein kinase-like (PK-like) 202 480 IPR011009 -
Vivi1g04403 579 PANTHER OS02G0152300 PROTEIN 72 575 - -
Vivi1g04403 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 579 IPR013083 -
Vivi1g04403 579 ProSiteProfiles U-box domain profile. 509 579 IPR003613 GO:0004842|GO:0016567
Vivi1g04403 579 Coils Coil 101 163 - -
Vivi1g04403 579 ProSiteProfiles Protein kinase domain profile. 226 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04403 579 Pfam U-box domain 510 578 IPR003613 GO:0004842|GO:0016567
Vivi1g04403 579 Pfam Protein tyrosine and serine/threonine kinase 231 480 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04403 Vivi-Chr1 94029904 94037930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04403 95 579 U-box Gene Family AT3G49060 50.511 5.28e-162 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi1g04403 PK_Tyr_Ser-Thr 3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04403 - - gmx:100799675 855.899