Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04402 ATGGGTAGCATCCAAGAAGCGGTATCGGTTGCGGAAGAGCGAGTGGAGGATGTGGTAAACGACACCGTTTACGTTGCGGTGGGAAAGAACGCGAAGAAGAGCCAGCGACTGTTGCATTGGGTAAATCAGAATTTCTCAGGGAAGGAAATTTGTCTTCTTCATGTTCATCAAACCGATCCTCTGAATTCGTTGAACTCAGATGCCTCTGAAATAGAACCTAAAGACGATGTAATCGAGGCATTCCAGGAGACTGATAGGCAAAAAGTGCATGAACTCCTAGACCAGTTCATCCTCACTCTGGTTCCGGAGGGGGTACATGCCTCGAAATTGTTGATTGAGAAGGATAATATTGAGAAAGGGATCATAGAAGCTATTGCTCAATACAATATTAGATGTCTTGTAATGGGAGCAGCTGCAGACAGACAGAAGTTGAGGTTAGATAGTGAAGACACACCTGTAATAGAGACTGCCCCTGTATTATTGATGCTCGACTCGAATATGGAAGCCAAACAATCTGAAAAAATTAAATCACAATTGATTCCGGATGTATTGAAATATTTAGATTCTGGTTATACGGAAGAGACCAAAAATATCAATTCCCACTGCTCTTTAAATGCAGAATGGTCCTTTAACAGTGTTATTGCAAGGACAAAGTTGACAGATTTGCTTATTCATGAGGATGATGAAGCATTACAAAACTGGTGTGCTAAGGAGTTAACTAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAGCAAGACGTACAAGAAATGAAGAATCAGCGAGATAAAATCGTAAGCGAATTGCAAATGCTCGAAGACCGGATTTCAGCTCTTAGAAACCAATTGTTTGAGTCCGAGTGTTCGGCAACTGAGTTGGAAGAGAAGATTTTATTAGCTGTGGATCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTGAGGATAGAACATGCAAATGCAGTTAAGAAAGTTGAAATGCTGAAAAAATTTGGAGAAGTGGATACTACATCCTCTTATGTGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAATTGTGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCTTGTTGCCATAAAAATGCTACCCTCTTATGGTTGTCTGAACCAATTTGAGTTCCAACATCAGGTTGAGGTTTTAAGTAGAATAAGACATCCAAACCTGTTAACTTTAATTGGAAGCTGTGCAGAGTCTAAGACACTTGTGTATGAATACCTAAACAATGGTAGCCTTGAAAGTCATCTTGCATGCAAAGACAAGACTCCACTTCCATGGCAAATTCGAATGTCCATTGCTACTGACATATGCTCTGCTTTAATCTTCCTTCACTCAAGTGAGCCTTGTATTGTCCATGGGAATCTGAAGCCTAGTAAGGTTCTGCTTGATGCTAATTTTGTTGCCAAACTTGGTGATTTGGGGATTCCTTCTTTAGTCAAGCATGGTGTGGATTCAGCTGACACTGGGACAGTAGTATATAACAACTCACATAAAGGTTTGGTGTATGTGGATCCAGAGTATCTTGATACTGGTAAACTGACACCGGAGTCAGATGTGTATTCATTTGGAATCATACTCTTACAACTTCTAACTGGAAGACCACTTTTGGGGCTAGTTAGAGATATGAAATGTGCATTGGAAAAAGAAAATCTTAAAACTGTGTTGGACTTTTCAGCCGGTGAATGGCCACTTCATCAAACCACACAAATGGCATGTTTAGCATTAAGGTGTTGTGAGAAGAATTGGCTGAACCGGCCAGATCTTGTATCAGAAGTCTGGAGTGTTCTTAAACCATTCAGAACTATTTGCATAAACAGGAGACAGGAGTTGACTTCTAAGAAGCTTCAACGAGCCCCTTCTCACTTTGTCTGCCCCATTGTCCAGGAAGTTATGGAAGATCCCTACATTGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGGGGATGGTTGGACAGTGGTCACAACACTTCCCCTATGACAAACCTCAAGCTGGAACATACAGATTTGGTACCTAATTATGCATTACATAATGCCATTCGGGAGTGGCAGCAACAGTGA 2142 0.4085 MGSIQEAVSVAEERVEDVVNDTVYVAVGKNAKKSQRLLHWVNQNFSGKEICLLHVHQTDPLNSLNSDASEIEPKDDVIEAFQETDRQKVHELLDQFILTLVPEGVHASKLLIEKDNIEKGIIEAIAQYNIRCLVMGAAADRQKLRLDSEDTPVIETAPVLLMLDSNMEAKQSEKIKSQLIPDVLKYLDSGYTEETKNINSHCSLNAEWSFNSVIARTKLTDLLIHEDDEALQNWCAKELTRRKEVEEQLAREKQDVQEMKNQRDKIVSELQMLEDRISALRNQLFESECSATELEEKILLAVDLLISFKEKRDKLRIEHANAVKKVEMLKKFGEVDTTSSYVVEFPAFSFMEINEATHDFDQSWKIGEGNCGSVYKGLLRNMLVAIKMLPSYGCLNQFEFQHQVEVLSRIRHPNLLTLIGSCAESKTLVYEYLNNGSLESHLACKDKTPLPWQIRMSIATDICSALIFLHSSEPCIVHGNLKPSKVLLDANFVAKLGDLGIPSLVKHGVDSADTGTVVYNNSHKGLVYVDPEYLDTGKLTPESDVYSFGIILLQLLTGRPLLGLVRDMKCALEKENLKTVLDFSAGEWPLHQTTQMACLALRCCEKNWLNRPDLVSEVWSVLKPFRTICINRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHNTSPMTNLKLEHTDLVPNYALHNAIREWQQQ 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04402 713 Coils Coil 235 297 - -
Vivi1g04402 713 Pfam Protein tyrosine and serine/threonine kinase 365 614 IPR001245 GO:0004672|GO:0006468
Vivi1g04402 713 Pfam U-box domain 644 712 IPR003613 GO:0004842|GO:0016567
Vivi1g04402 713 Gene3D Phosphorylase Kinase; domain 1 331 432 - -
Vivi1g04402 713 Gene3D HUPs 10 139 IPR014729 -
Vivi1g04402 713 Gene3D Transferase(Phosphotransferase) domain 1 433 628 - -
Vivi1g04402 713 SMART Ubox_2 647 710 IPR003613 GO:0004842|GO:0016567
Vivi1g04402 713 SUPERFAMILY RING/U-box 641 713 - -
Vivi1g04402 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 713 IPR013083 -
Vivi1g04402 713 PANTHER OS02G0152300 PROTEIN 23 709 - -
Vivi1g04402 713 ProSiteProfiles Protein kinase domain profile. 360 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04402 713 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 32 138 - -
Vivi1g04402 713 SUPERFAMILY Protein kinase-like (PK-like) 336 614 IPR011009 -
Vivi1g04402 713 CDD RING-Ubox_WDSUB1-like 645 700 - -
Vivi1g04402 713 ProSiteProfiles U-box domain profile. 643 713 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04402 Vivi-Chr1 94029606 94037930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04402 229 713 U-box Gene Family AT3G49060 50.511 2.41e-160 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi1g04402 PK_Tyr_Ser-Thr 4.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04402 - - gmx:100799675 1000.73