Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04401 ATGGGTAGCATCCAAGAAGCGGTATCGGTTGCGGAAGAGCGAGTGGAGGATGTGGTAAACGACACCGTTTACGTTGCGGTGGGAAAGAACGCGAAGAAGAGCCAGCGACTGTTGCATTGGGTAAATCAGAATTTCTCAGGGAAGGAAATTTGTCTTCTTCATGTTCATCAAACCGATCCTCTGAATTCGTTGACAGACTCAGATGCCTCTGAAATAGAACCTAAAGACGATGTAATCGAGGCATTCCAGGAGACTGATAGGCAAAAAGTGCATGAACTCCTAGACCAGTTCATCCTCACTCTGGTTCCGGAGGGGGTACATGCCTCGAAATTGTTGATTGAGAAGGATAATATTGAGAAAGGGATCATAGAAGCTATTGCTCAATACAATATTAGATGTCTTGTAATGGGAGCAGCTGCAGACAGACAGAAGTTGAGGTTAGATAGTGAAGACACACCTGTAATAGAGACTGCCCCTGTATTATTGATGCTCGACTCGAATATGGAAGCCAAACAATCTGAAAAAATTAAATCACAATTGATTCCGGATGTATTGAAATATTTAGATTCTGGTTATACGGAAGAGACCAAAAATATCAATTCCCACTGCTCTTTAAATGCAGAATGGTCCTTTAACAGTGTTATTGCAAGGACAAAGTTGACAGATTTGCTTATTCATGAGGATGATGAAGCATTACAAAACTGGTGTGCTAAGGAGTTAACTAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAGCAAGACGTACAAGAAATGAAGAATCAGCGAGATAAAATCGTAAGCGAATTGCAAATGCTCGAAGACCGGATTTCAGCTCTTAGAAACCAATTGTTTGAGTCCGAGTGTTCGGCAACTGAGTTGGAAGAGAAGATTTTATTAGCTGTGGATCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTGAGGATAGAACATGCAAATGCAGTTAAGAAAGTTGAAATGCTGAAAAAATTTGGAGAAGTGGATACTACATCCTCTTATGTGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAATTGTGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCTTGTTGCCATAAAAATGCTACCCTCTTATGGTTGTCTGAACCAATTTGAGTTCCAACATCAGGTTGAGGTTTTAAGTAGAATAAGACATCCAAACCTGTTAACTTTAATTGGAAGCTGTGCAGAGTCTAAGACACTTGTGTATGAATACCTAAACAATGGTAGCCTTGAAAGTCATCTTGCATGCAAAGACAAGACTCCACTTCCATGGCAAATTCGAATGTCCATTGCTACTGACATATGCTCTGCTTTAATCTTCCTTCACTCAAGTGAGCCTTGTATTGTCCATGGGAATCTGAAGCCTAGTAAGGTTCTGCTTGATGCTAATTTTGTTGCCAAACTTGGTGATTTGGGGATTCCTTCTTTAGTCAAGCATGGTGTGGATTCAGCTGACACTGGGACAGTAGTATATAACAACTCACATAAAGGTTTGGTGTATGTGGATCCAGAGTATCTTGATACTGGTAAACTGACACCGGAGTCAGATGTGTATTCATTTGGAATCATACTCTTACAACTTCTAACTGGAAGACCACTTTTGGGGCTAGTTAGAGATATGAAATGTGCATTGGAAAAAGAAAATCTTAAAACTGTGTTGGACTTTTCAGCCGGTGAATGGCCACTTCATCAAACCACACAAATGGCATGTTTAGCATTAAGGTGTTGTGAGAAGAATTGGCTGAACCGGCCAGATCTTGTATCAGAAGTCTGGAGTGTTCTTAAACCATTCAGAACTATTTGCATAAACAGGAGACAGGAGTTGACTTCTAAGAAGCTTCAACGAGCCCCTTCTCACTTTGTCTGCCCCATTGTCCAGGAAGTTATGGAAGATCCCTACATTGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGGGGATGGTTGGACAGTGGTCACAACACTTCCCCTATGACAAACCTCAAGCTGGAACATACAGATTTGGTACCTAATTATGCATTACATAATGCCATTCGGGAGTGGCAGCAACAGTGA 2145 0.4089 MGSIQEAVSVAEERVEDVVNDTVYVAVGKNAKKSQRLLHWVNQNFSGKEICLLHVHQTDPLNSLTDSDASEIEPKDDVIEAFQETDRQKVHELLDQFILTLVPEGVHASKLLIEKDNIEKGIIEAIAQYNIRCLVMGAAADRQKLRLDSEDTPVIETAPVLLMLDSNMEAKQSEKIKSQLIPDVLKYLDSGYTEETKNINSHCSLNAEWSFNSVIARTKLTDLLIHEDDEALQNWCAKELTRRKEVEEQLAREKQDVQEMKNQRDKIVSELQMLEDRISALRNQLFESECSATELEEKILLAVDLLISFKEKRDKLRIEHANAVKKVEMLKKFGEVDTTSSYVVEFPAFSFMEINEATHDFDQSWKIGEGNCGSVYKGLLRNMLVAIKMLPSYGCLNQFEFQHQVEVLSRIRHPNLLTLIGSCAESKTLVYEYLNNGSLESHLACKDKTPLPWQIRMSIATDICSALIFLHSSEPCIVHGNLKPSKVLLDANFVAKLGDLGIPSLVKHGVDSADTGTVVYNNSHKGLVYVDPEYLDTGKLTPESDVYSFGIILLQLLTGRPLLGLVRDMKCALEKENLKTVLDFSAGEWPLHQTTQMACLALRCCEKNWLNRPDLVSEVWSVLKPFRTICINRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHNTSPMTNLKLEHTDLVPNYALHNAIREWQQQ 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04401 714 Pfam U-box domain 645 713 IPR003613 GO:0004842|GO:0016567
Vivi1g04401 714 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 32 139 - -
Vivi1g04401 714 Pfam Protein tyrosine and serine/threonine kinase 366 615 IPR001245 GO:0004672|GO:0006468
Vivi1g04401 714 Gene3D Phosphorylase Kinase; domain 1 332 433 - -
Vivi1g04401 714 Coils Coil 236 298 - -
Vivi1g04401 714 SUPERFAMILY RING/U-box 642 714 - -
Vivi1g04401 714 PANTHER OS02G0152300 PROTEIN 23 153 - -
Vivi1g04401 714 CDD RING-Ubox_WDSUB1-like 646 701 - -
Vivi1g04401 714 Gene3D HUPs 10 140 IPR014729 -
Vivi1g04401 714 ProSiteProfiles Protein kinase domain profile. 361 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04401 714 SUPERFAMILY Protein kinase-like (PK-like) 337 615 IPR011009 -
Vivi1g04401 714 Gene3D Transferase(Phosphotransferase) domain 1 434 629 - -
Vivi1g04401 714 SMART Ubox_2 648 711 IPR003613 GO:0004842|GO:0016567
Vivi1g04401 714 ProSiteProfiles U-box domain profile. 644 714 IPR003613 GO:0004842|GO:0016567
Vivi1g04401 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 714 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04401 Vivi-Chr1 94029605 94037930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04401 230 714 U-box Gene Family AT3G49060 50.511 2.29e-160 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi1g04401 PK_Tyr_Ser-Thr 4.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04401 - - gmx:100799675 1007.28