Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04397 ATGGCTCCTAAACAACCCAGTACGGGTCTTTTCGTTGGATTGAACAAGGGTCACATCGTCACCAAGAAGGAATTGGCACCACGTCCCTCAGCTCGCAAGGGGAAAACAAGCAAGAGAGTTCACTTTGTGAGGAACCTCATCAGGGAGGTAGCTGGATTTGCACCATATGAGAAGCGTATCACTGAGTTGCTCAAGGTTGGAAAGGATAAGAGGGCATTGAAGGTCGCAAAGAGAAAGCTCGGAACCCACAAGCGTGCCAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTAAGAAAGATGAGGGCTGGTGGAGCTGGAGATAAGAAGAAATAG 333 0.4835 MAPKQPSTGLFVGLNKGHIVTKKELAPRPSARKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04397 110 MobiDBLite consensus disorder prediction 79 110 - -
Vivi1g04397 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vivi1g04397 110 Gene3D 60S ribosomal protein L36 1 108 IPR038097 -
Vivi1g04397 110 MobiDBLite consensus disorder prediction 87 110 - -
Vivi1g04397 110 FunFam 60S ribosomal protein L36 1 106 - -
Vivi1g04397 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 108 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vivi1g04397 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04397 Vivi-Chr1 93991617 93996314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04397 1 110 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 80.000 1.69e-58 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04397 K02920 - zju:107414508 214.927