Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04396 ATGTCAGAATCTGAGGAAGAAAACCAAGATTTTCCTCCCAAAACAAAAACATCATTAGAAGAACATGGTTGTGCTATGGATTTTGATCTGGATTTAGAAACTTCATGGCCTTTGGATCACATGTCCTTTATCTCAAACCCTATGTCACCTTTTCTGTTTTCCACCATCTCTGATCAACCTTCCTCTCCTCTATGGGTTTTTAGTGATGGAGAAGATGACAAACATGCCAAACTTGCAGCTTCAGCTTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTTGAATTCAGTAACTGAGAAGCCGGATGAGAACGATGGCAACAAAACGTTTTTGCCGCCGCTGATGCCGCCAATAGAAAATTTGGATGGATACTGTGCAATCAAGGAAAAGATGACACAGGCGCTTCGCTATTTCAAAGAATGGACTGAACTGAATATTCTGGCTCAGGTTTGGGCACCGGTGAGGAATGGTAACCGGTATGAACTTACAACTTCAGGTCAACCCTTTGTGCTTGATCCGCATAGTAATGGACTCAACCAGTATAGAACGGCTTCCCTGATGTATAAGTTTTCGGTGGATGGAGAGAACGATGGAACTCAGGGACTTCCTGGTCGAGTTTTCCAGCAGAAATTACCAGAATGGTCTCCTAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTATAACGTTCGTGGAACGTTGGCTTTGCCTGTATTTGAACCTTCGTTGCAGTCGTGTATCGGTGTGATAGAGTTGATTATGACTTCACTGAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTTGAGGCGGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATTCACTCAGATTTGCAATGAAGGGCGTCAAAATGCGTTATCTGAGATCTTGGAGATATTGACAGTGGTGTGCGAAACTCATAATTTGCCTCTCGCGCAAACATGGGTTCCTTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCGAGTTTTGACGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGAGGTAGCAGCTTATATTATAGATGCTCATTTATGGGGTTTTCGAGAGGCGTGCGTCGAGCATCACTTACAACATGGTCAAGGCGTTGCGGGAAGAGCTTTTTTGTCCCAAAACATGAGCTTCTGCACAAACATTACGAAATTCTGCAAAACAGATTATCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAACAGGCTCTTTTGCAATCTGTTTGCGGAGTTTTCATACAGGAAACGACGATTATGTATTAGAGTTTTTTCTGCCTCCTGGGATCACAGAATTTCATGAACAGAAGACACTCTTGGGATCTATATTGGCAACAATGAAACAGCATTTTCAGAGTCTTAGTATTGCTGTTGGTGTTGAACTTGAGGAAAACGGTTCGGTTGAAATTATTGAAGCAACAGATGAAGGAATCCGAGTTAGGATTGAATCTATTCCAATTGCTCAATCTATTAAATCACCACCTATACCCGATGCCTCGCCAAATATGGAGGAGGAGTTACCACATGATCCATTAGAGATTCATGGTGAAAATTTAGGTGGAAGCATTGATCCAAAGCCCTCCTTAGAGAATAAAAACATAAAGAAACCCTCAGAGAGGAAGCGTGGAAAAACTGAGAAATCAATCAGTCTTGAAGTTTTACAACGTTATTTCGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGCGTATGCCCTACTACAATGAAGCGCATCTGCAGGCAGCATGGTATATCCCGTTGGCCATCTCGAAAGATAAACAAGGTTAACCGTTCCCTGTCAAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGGACGTTTGATTTGAATTCTCTCAACACTAATCAACTTCCAGTTGCTGGTTCTTTTCCCGAGCCTTCAAATCCGAACAAGTCCAGCCAGCAAGCTTCATTAAACAATAGGCTATCAGAGCCTCAGATGAAAGAGAATGAATTTCACGCCCCTAAAGAAACTAACATACCAATTGTATTGGAAGATCAACTGCTTGGAGGAAGCAAACATGGTCTTGGCAAGGACCGAAAAAGGACTCGAAGTAGGAGTATCTCTAGCGAAGATAGCATAAATCCTACTTCTCATGGTTCGTGCCATGATAGTCCCCCGGATGAAATTTCAACTGTAAAGGATCTATTCATTCCACCCAACAATGAGCAATATGTTGTGTTGAGGGGGTCGCCAGAGTCGAGAGTGCAGCCAACAAATGTATTCAACTCTCCAACTGCTCACCGATTGCCCGACAATATCTTAGCAGAACTTCAAGAGCCGTTTGGAGGAATGCTAATAGAGGATGCAGGTAGTTCAAAAGACTTGAGAAACTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGATATAGCTCCAGAACCTTATGGGAATAACCTTCCATGTTCATATCTGGCTCCTAAACAATGCATGGACGCTACTAATAAATCGGTGACGCCTTTCGCAGCTAGAAAAGAAATGAAAACTGTGACTATTAAGGCAACATATAGAGAAGATATTATAAGGTTTAGGGTCTCTTTGAACTGCGGCATTGCGGAATTGAAAGAGGAAGTTGCCAAAAGATTGAAACTTGAGATTGGTACATTTGATGTCAAGTACATGGATGATGATAATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGTATGTTTCAAGATCCTCGGGTGGAAGCAACATAATCCGAGTTTTGGTAAATGACGTAATGTCAAATCTCGGAAGCTCCTGGGAGAGCTCGGGGGAGTGA 2883 0.4259 MSESEEENQDFPPKTKTSLEEHGCAMDFDLDLETSWPLDHMSFISNPMSPFLFSTISDQPSSPLWVFSDGEDDKHAKLAASAFSDCHKIFSCDLNSVTEKPDENDGNKTFLPPLMPPIENLDGYCAIKEKMTQALRYFKEWTELNILAQVWAPVRNGNRYELTTSGQPFVLDPHSNGLNQYRTASLMYKFSVDGENDGTQGLPGRVFQQKLPEWSPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSLQSCIGVIELIMTSLKINYAPEVEKICKALEAVNLRSSEILDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEVAAYIIDAHLWGFREACVEHHLQHGQGVAGRAFLSQNMSFCTNITKFCKTDYPLVHYALMFGLTGSFAICLRSFHTGNDDYVLEFFLPPGITEFHEQKTLLGSILATMKQHFQSLSIAVGVELEENGSVEIIEATDEGIRVRIESIPIAQSIKSPPIPDASPNMEEELPHDPLEIHGENLGGSIDPKPSLENKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFDLNSLNTNQLPVAGSFPEPSNPNKSSQQASLNNRLSEPQMKENEFHAPKETNIPIVLEDQLLGGSKHGLGKDRKRTRSRSISSEDSINPTSHGSCHDSPPDEISTVKDLFIPPNNEQYVVLRGSPESRVQPTNVFNSPTAHRLPDNILAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDIAPEPYGNNLPCSYLAPKQCMDATNKSVTPFAARKEMKTVTIKATYREDIIRFRVSLNCGIAELKEEVAKRLKLEIGTFDVKYMDDDNEWVLIACDADLQECMYVSRSSGGSNIIRVLVNDVMSNLGSSWESSGE 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04396 960 CDD PB1_NLP 865 946 IPR034891 -
Vivi1g04396 960 Gene3D - 861 944 - -
Vivi1g04396 960 ProSiteProfiles PB1 domain profile. 864 947 IPR000270 GO:0005515
Vivi1g04396 960 PANTHER PROTEIN NLP8 58 959 IPR045012 GO:0003700
Vivi1g04396 960 Pfam RWP-RK domain 573 621 IPR003035 -
Vivi1g04396 960 ProSiteProfiles RWP-RK domain profile. 560 641 IPR003035 -
Vivi1g04396 960 MobiDBLite consensus disorder prediction 699 747 - -
Vivi1g04396 960 MobiDBLite consensus disorder prediction 707 723 - -
Vivi1g04396 960 MobiDBLite consensus disorder prediction 554 571 - -
Vivi1g04396 960 Pfam PB1 domain 864 946 IPR000270 GO:0005515
Vivi1g04396 960 MobiDBLite consensus disorder prediction 652 675 - -
Vivi1g04396 960 MobiDBLite consensus disorder prediction 724 740 - -
Vivi1g04396 960 MobiDBLite consensus disorder prediction 516 571 - -
Vivi1g04396 960 SMART PB1_new 864 947 IPR000270 GO:0005515
Vivi1g04396 960 SUPERFAMILY CAD & PB1 domains 862 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04396 Vivi-Chr1 93985439 93989584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04396 261 960 NLP Transcription Factor Family AT4G24020 55.070 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vivi1g04396 PB1 2.3e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04396 - - gmx:100785821 1486.47