Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04392 ATGATTCAATCGGTTTCTGTTACGGTGAACTTCGCCGTGGCTTTTGCATTGGTGTGTATATTCACGGTGGAGCCATGGCGCGTTGTTAACTCACAAGAAGAACAGAGGCTTCTAGTGGACATGACGATTGTTACGAACGCACGTGATACTGGAGCTCTTTGTTTGGATGGGAGTTTACCGGGTTATCATTTGCACAGAGGTTATGGAGCAGGGGAGAATAATTGGCTTCTACAATTTGAGGGTGGTGGATGGTGCAATGACTTGCAATCATGCCTGGAAAGAGCACCAACTCGCAGGGGTTCAACAAAGCACATGAACAAGTTTGCGGTTTTCTCTGGTATTTTAAGCAACAATGCCACCCTTAATCCAGACTTTTACAATTGGAACCGGGTGAAACTGAGATACTGTGATGGAGCTTCATTTACTGGAAACAGAGTGTTCAAAAATGGGACAAAAACACTTTACTTCAAAGGGCAAAAGATTTGGGAAGCCATTATTGAGGATCTTTTACCAAAAGGTTTAGGAAACGCATACAAGGCATTGCTTTCTGGCTGCTCAGCAGGAGGTTTAGCCACCTTTCACCATTGTGACAACTTCACTAAGTATTTGCCAACAACTACTACTGTTAAATGCTTGAGTGATGCAGGTTTTTTCCTTGATGGAAGAGATGTCAGTTTGAACCATACTATGAGATACTTTGTCAAAAGTCTAGTTACATTGCAGGGGATAGAGCAGAACCTTAATGAAAACTGCACGAGTGCGCTTTCCTATCCAGACTTGTGCTTCTTTCCACAATATGCGTTGAAATATATATCAACACCGTATTTTATCTTGAATTCTGCCTATGATGTATTCCAATTTCATCATATATTGGCGCCACCTTCAGCTGATCCCCTTGGGCACTGGAGTCACTGCAGGGCGAACAAATCGACATGCACGCCAGCCCAAATTAATACATTGCAAGGTTTTAGGCTCAGCATGCTTGCAGCTTTGAAACCGTTCTACTTTTATTCGAAAAGAGGGGGAATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGAATCGCAAGAAACATGGTTTGGAGACGATTCTCCTAGAATAAACAACAAGACTATTGCAGAAGCAGTTGGTGATTGGTATTTTAGTAGAAACAGAAGCAAGCTAATTGACCGTCCGTATCCATGTGATAATGATAAAACTTGTCATAATTTAATACCATAA 1224 0.4158 MIQSVSVTVNFAVAFALVCIFTVEPWRVVNSQEEQRLLVDMTIVTNARDTGALCLDGSLPGYHLHRGYGAGENNWLLQFEGGGWCNDLQSCLERAPTRRGSTKHMNKFAVFSGILSNNATLNPDFYNWNRVKLRYCDGASFTGNRVFKNGTKTLYFKGQKIWEAIIEDLLPKGLGNAYKALLSGCSAGGLATFHHCDNFTKYLPTTTTVKCLSDAGFFLDGRDVSLNHTMRYFVKSLVTLQGIEQNLNENCTSALSYPDLCFFPQYALKYISTPYFILNSAYDVFQFHHILAPPSADPLGHWSHCRANKSTCTPAQINTLQGFRLSMLAALKPFYFYSKRGGMFINSCFAHCQSESQETWFGDDSPRINNKTIAEAVGDWYFSRNRSKLIDRPYPCDNDKTCHNLIP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04392 407 Pfam Pectinacetylesterase 33 385 IPR004963 GO:0016787
Vivi1g04392 407 PANTHER NOTUM-RELATED 19 404 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04392 Vivi-Chr1 93773277 93779595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04392 2 407 Carbohydrate Esterase AT5G23870 62.500 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04392 K19882 - gmx:100802358 676.781