Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04380 ATGGTGAACCAAAGACAACGCCTCGCCAAGAAACGCTTCAAAGCCGAAAACCCCTCTCTCTTCCCCAAACCAGAACCCACTCCCCCAAAAGACCCATCGAAAAAGAAAAAACCCAAATTCAAACGCAAAAAGCCCGACTCAAAAGACAAACCGCGTACCGGAAAACGCCCCCTTCGAGTCCCCGGAATGAAACCCGGTGACAGCTGTTTCATCTGCAAGGGATTAGATCATATCGCTAAGTTTTGCAGCGAGAAAGCTGAGTGGGAGAGGAATAAGATTTGTTTGCGGTGTCGGCGACGGGGGCATAGAGCTCAGAATTGTCCTGAGGGTTCGAAGGATGTGAAGTTTTGTTATAATTGTGGTGATAATGGTCACTCTCTTGCTAATTGTCCGTATCCGCTTGAAGAAGGAGGGACAAAGTTTGCTGAGTGTTTTGTTTGTAATGAACAAGGGCATTTGAGTAGGAATTGCCCTAAAAATGCTAATGGCATTTATCCAAAGGGTGGTTGTTGTAAACTATGTGGTGGTGTGACACATTTGGCAAAGGATTGTCCTGACAAAGGGCAAAGTGGATTTGGTGGTGCTGCTAAAGGGCCTGTTCACAACTTGCTGAGAACTGACGAGAGGCCCAAGGGTCAAGTTACCAAATTTTTGAGCGGAGATGATATGGAAGATGACTTTACCTCACAAGCAATAATAAACGATGAGAAGAACAAGTCTGCCAAGTCCAAAGATGGCAATGTAAAACCAAAGAAAGGTCCTAAAGTCGTAAATTTTGACTAG 783 0.4508 MVNQRQRLAKKRFKAENPSLFPKPEPTPPKDPSKKKKPKFKRKKPDSKDKPRTGKRPLRVPGMKPGDSCFICKGLDHIAKFCSEKAEWERNKICLRCRRRGHRAQNCPEGSKDVKFCYNCGDNGHSLANCPYPLEEGGTKFAECFVCNEQGHLSRNCPKNANGIYPKGGCCKLCGGVTHLAKDCPDKGQSGFGGAAKGPVHNLLRTDERPKGQVTKFLSGDDMEDDFTSQAIINDEKNKSAKSKDGNVKPKKGPKVVNFD 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04380 260 ProSiteProfiles Zinc finger CCHC-type profile. 117 131 IPR001878 GO:0003676|GO:0008270
Vivi1g04380 260 ProSiteProfiles Zinc finger CCHC-type profile. 144 159 IPR001878 GO:0003676|GO:0008270
Vivi1g04380 260 MobiDBLite consensus disorder prediction 231 260 - -
Vivi1g04380 260 SUPERFAMILY Retrovirus zinc finger-like domains 62 110 IPR036875 GO:0003676|GO:0008270
Vivi1g04380 260 PANTHER OS04G0555800 PROTEIN 1 259 - -
Vivi1g04380 260 MobiDBLite consensus disorder prediction 237 251 - -
Vivi1g04380 260 SMART c2hcfinal6 116 132 IPR001878 GO:0003676|GO:0008270
Vivi1g04380 260 SMART c2hcfinal6 93 109 IPR001878 GO:0003676|GO:0008270
Vivi1g04380 260 SMART c2hcfinal6 170 186 IPR001878 GO:0003676|GO:0008270
Vivi1g04380 260 SMART c2hcfinal6 143 159 IPR001878 GO:0003676|GO:0008270
Vivi1g04380 260 SMART c2hcfinal6 68 84 IPR001878 GO:0003676|GO:0008270
Vivi1g04380 260 SUPERFAMILY Retrovirus zinc finger-like domains 111 160 IPR036875 GO:0003676|GO:0008270
Vivi1g04380 260 ProSiteProfiles Zinc finger CCHC-type profile. 94 109 IPR001878 GO:0003676|GO:0008270
Vivi1g04380 260 MobiDBLite consensus disorder prediction 34 49 - -
Vivi1g04380 260 Pfam Zinc knuckle 117 131 IPR001878 GO:0003676|GO:0008270
Vivi1g04380 260 Pfam Zinc knuckle 144 159 IPR001878 GO:0003676|GO:0008270
Vivi1g04380 260 Gene3D - 62 115 - -
Vivi1g04380 260 FunFam Zinc finger CCHC-type-containing 9 141 193 - -
Vivi1g04380 260 MobiDBLite consensus disorder prediction 1 62 - -
Vivi1g04380 260 Gene3D - 116 163 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04380 94 190 C2H2 Transcription Factor Family AT5G20220 31.624 1.08e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04380 - - gmx:121174300 345.895