LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g04356	ATGGGTAAAGCGCCTTGTTGTGATAAACATGGAGTGAGGAGAGGAGCTTGGACTCCTGAAGAAGATCAAGCTTTGGCTGACTATATCAACAAACATGGCCATGGAAGTTGGCGTACACTTCCTAAGCATGCAGGTCTCTTGAGATGTGGAAAAAGTTGTCGGCTTCGATGGATAAACTATCTTCGTCCTGGCATCAAGCGTGGCCCATTTACTAATGAAGAAGAAACTACTATTATGCAACTTCATGCTATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAGCTACCTGGAAGAACAGACAACGAGATTAAGAACTACTGGAACACACATCTAAAGAAGCGCGTCATTCGGTCACTAGGGGAAAAACATCCATGTCTTATTCCTGATGGGAATCTCCTGTCTAACAATGCTCCTTCTACGCGGCACATGGTTCAATGGGAAAGTGCGAGGGTTGAGGCAGAGGCAAGGCTGTCAATTGAATCCACATTGCACAATTCAGGCTCTACGACTAAAACATATCCGGATTACTTTCTTAAACTTTGGAATTCTGATGTTGGCCTGTCGTTTCGTAAGATCAAGGGAAAGGAAGAACTGATGTCCCAAAGTCTAGTCTCACAAGCATCGGCTTCATCGCTATCATCAACAAAGTTAGATGAGTCATGTTCTGATGTCTCGTCTCAGGTGAAAAACACTCAAAAGCATAAGCAAAGCCTTAAAGTGTCAACCACACCAAAGCTTGAAATTGACAACATGAAGCAAGAACAAAACAGGTCTCGCGAACAAACAAATAGCTACAAACCAAAGCTTGACGACAATAGAGCTGGTTCAGATTCAGGAAATTATGAATTTCTGGATACTTCTGATTCTGCACTAAAGCACCTGTTACATATGCCTGATGATATAGAATTCTTGGGACACACTGACAATTTCTTGAATCTCCTTGATGGTAGATATGACTAA	963	0.4278	MGKAPCCDKHGVRRGAWTPEEDQALADYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTNEEETTIMQLHAMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRVIRSLGEKHPCLIPDGNLLSNNAPSTRHMVQWESARVEAEARLSIESTLHNSGSTTKTYPDYFLKLWNSDVGLSFRKIKGKEELMSQSLVSQASASSLSSTKLDESCSDVSSQVKNTQKHKQSLKVSTTPKLEIDNMKQEQNRSREQTNSYKPKLDDNRAGSDSGNYEFLDTSDSALKHLLHMPDDIEFLGHTDNFLNLLDGRYD	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g04356	320	SMART	sant	13	63	IPR001005	-
	Vivi1g04356	320	SMART	sant	66	114	IPR001005	-
	Vivi1g04356	320	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Vivi1g04356	320	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Vivi1g04356	320	CDD	SANT	69	112	IPR001005	-
	Vivi1g04356	320	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Vivi1g04356	320	FunFam	Myb transcription factor	11	67	-	-
	Vivi1g04356	320	CDD	SANT	16	61	IPR001005	-
	Vivi1g04356	320	MobiDBLite	consensus disorder prediction	224	281	-	-
	Vivi1g04356	320	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Vivi1g04356	320	Gene3D	-	69	116	-	-
	Vivi1g04356	320	MobiDBLite	consensus disorder prediction	251	276	-	-
	Vivi1g04356	320	FunFam	MYB transcription factor	69	116	-	-
	Vivi1g04356	320	MobiDBLite	consensus disorder prediction	224	250	-	-
	Vivi1g04356	320	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Vivi1g04356	320	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Vivi1g04356	320	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Vivi1g04356	320	Gene3D	-	14	66	-	-
	Vivi1g04356	320	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	256	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g04356	Vivi-Chr1	92910778	92913784	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g04356	1	212	MYB Transcription Factor Family	AT3G61250	61.435	1.26e-89	268

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vivi1g04356		Myb_DNA-binding	3.6e-16	CL0123