Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04354 ATGGGGTTGGAGACACTAGAAAAGACAAAACCAAAACATAGGAAGGGTTTATGGTCACCTGAAGAAGATCATAAACTCAGAAACTACATCCTTAAATATGGTCATGGCTGTTGGAGCTCTGTCCCTATTAAGTCAGGCTTGCAAAGGAATGGAAAAAGCTGCAGATTAAGGTGGATTAACTATTTAAGGCCAGGATTAAAGAGAGGAAAGTTCAGCAAACAAGAGGAGGAGACAATCCTGACCCTTCATCACATGTTAGGCAACAAGTGGTCACAAATAGCACAACATTTACCAGGAAGAACAGACAATGAAATAAAAAACTATTGGCATTCATATTTGAAGAAAAGAGTGGCCAAAGCTAATGAAATGGAATCTCAAAAACACTTTCAATATGCTACCTCAAGCTCAGACACAATCAACTCTTCACACTCTCTTCAAAAACTTGCAACTCAAGATCCACACACTTACAACAACATCATCACCAAAGAGACTCAACAAAGCTCATTACCAAAGCTTTTATTCGCCGAATGGCTTTCGCTTGATCATGTAAACGGTACGAACTCTTCAAATTCAGTTGAGTCTTTGGTCATGAGAAATGGATTTGATCAAAATAATTCAGGTTTTCAAGAAGCTGCAATGCATCATGATGTGTCGGAGTATCATAATAGTGTGATGTTCAATTCACAAGTTAAGTTTGCTAACCAAATGATGGGAAATGGGTTTGTTCATTGCATGCCTGAGGTTGATTTGAGTAACAATTTCAATTTAAGCAATGATGCAATGTATGTTTGA 792 0.3775 MGLETLEKTKPKHRKGLWSPEEDHKLRNYILKYGHGCWSSVPIKSGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKRVAKANEMESQKHFQYATSSSDTINSSHSLQKLATQDPHTYNNIITKETQQSSLPKLLFAEWLSLDHVNGTNSSNSVESLVMRNGFDQNNSGFQEAAMHHDVSEYHNSVMFNSQVKFANQMMGNGFVHCMPEVDLSNNFNLSNDAMYV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04354 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vivi1g04354 263 CDD SANT 18 62 IPR001005 -
Vivi1g04354 263 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vivi1g04354 263 SMART sant 67 115 IPR001005 -
Vivi1g04354 263 SMART sant 14 64 IPR001005 -
Vivi1g04354 263 Gene3D - 15 67 - -
Vivi1g04354 263 FunFam MYB transcription factor 12 68 - -
Vivi1g04354 263 FunFam MYB transcription factor 70 141 - -
Vivi1g04354 263 PANTHER MYB DOMAIN PROTEIN 55 7 233 - -
Vivi1g04354 263 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi1g04354 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi1g04354 263 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vivi1g04354 263 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vivi1g04354 263 Gene3D - 69 140 - -
Vivi1g04354 263 CDD SANT 70 113 IPR001005 -
Vivi1g04354 263 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04354 Vivi-Chr1 92883273 92885467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04354 8 197 MYB Transcription Factor Family AT3G48920 54.922 2.46e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g04354 Myb_DNA-binding 8.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04354 K09422 - gmx:778167 397.512