Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04349 ATGACACACTCAGAATTCAGTCCCATTTTCATCTTCCTCCTTCTCTTTGTTTCTTATCATCGTCACTACGGTACTGCAGAAGCTCAACCAGTAAAGCATCCATCGTGTCTTTACGGATCTCCAACAACAATATGGGATGTTCCGCCGCTTGGTGTAATTGTTGGAGCCGCCATTGCAACAGTTCTCTTAATTTTCATCTTCTTGTTGTTCCTGCGCCACTACTTATATTCGGATTCATCAAAATGCGAAGCTGCCATTGGTATTAAGCCTCAACTTCTCAAAACTTTTCCAATCTTATTGTACTCTTCAGTCATCAAACATGTTAAGGAAGGTGATGAAGGTACTCTACCATGTGCTGTGTGTCTCTCTGACTTCAATGACAATGATAGCGTTCGTGTGTTACCTCGATGTGATCATTTCTTTCATCCTCCATGTATTGATGCTTGGCTTTCTACTCATGCCACTTGTCCTGTTTGTCGTAACAACCTCAACGGTGGCCGTGGAATTGAATCGGTGTAA 519 0.4239 MTHSEFSPIFIFLLLFVSYHRHYGTAEAQPVKHPSCLYGSPTTIWDVPPLGVIVGAAIATVLLIFIFLLFLRHYLYSDSSKCEAAIGIKPQLLKTFPILLYSSVIKHVKEGDEGTLPCAVCLSDFNDNDSVRVLPRCDHFFHPPCIDAWLSTHATCPVCRNNLNGGRGIESV 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04349 172 PANTHER RING FINGER DOMAIN-CONTAINING 38 163 - -
Vivi1g04349 172 FunFam E3 ubiquitin-protein ligase ATL6 77 165 - -
Vivi1g04349 172 CDD RING-H2_EL5-like 118 160 - -
Vivi1g04349 172 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Vivi1g04349 172 SMART ring_2 118 159 IPR001841 -
Vivi1g04349 172 Pfam Ring finger domain 118 160 IPR001841 -
Vivi1g04349 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 165 IPR013083 -
Vivi1g04349 172 SUPERFAMILY RING/U-box 103 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04349 Vivi-Chr1 92780828 92781346 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04349 10 163 Rapid Response to Elicitors AT3G05200 37.725 3.05e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04349 K10664 - vvo:131612393 191.815