Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04348 ATGTTACCCATTATCATTTTCTTCGTCCTTGTTTGTGCTCATCAGTATTGTACCGCAGAAGCACAGTCAGACGACTCATCAGAAACATTATGGGACTTGTCTTCGCTTGGTGTAGTTCTTGAAGGCCTCATTGCAACAATTCTCTTACTTTTCATCTTTGTATTGTTCCTAAAACGTTTCAGATACTCACAAAACGACGTAGCAGAGATACCAAAGTCTGAAAATGACACTGGTATAAATCCTCAACTACTCCAAACTTTCCCAATTGTATTGTACTCTTCCGTAAACAAACATGTTAAGGAAGGTGATGAAGGTCCTCTACCATGTGCCGTGTGTCTCGCTGACTTCAATGACAACGATAACGTTCGAGTTTTACCTCAATGTGATCATTTCTTTCATCCTCCGTGTATTGATGCCTGGCTTTCTACTCATGTTACTTGTCCTGTTTGTCGTACTGAGCTCAATCTTCAACCTTCCTTTCAGTTTGCCATTTCTGTTAATACACAAATCAATGGTTGTGGTGGAATTGAAAGGGTATAA 540 0.3981 MLPIIIFFVLVCAHQYCTAEAQSDDSSETLWDLSSLGVVLEGLIATILLLFIFVLFLKRFRYSQNDVAEIPKSENDTGINPQLLQTFPIVLYSSVNKHVKEGDEGPLPCAVCLADFNDNDNVRVLPQCDHFFHPPCIDAWLSTHVTCPVCRTELNLQPSFQFAISVNTQINGCGGIERV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04348 179 SMART ring_2 109 150 IPR001841 -
Vivi1g04348 179 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vivi1g04348 179 SUPERFAMILY RING/U-box 108 160 - -
Vivi1g04348 179 CDD RING-H2_EL5-like 109 151 - -
Vivi1g04348 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 156 IPR013083 -
Vivi1g04348 179 PANTHER RING FINGER DOMAIN-CONTAINING 12 154 - -
Vivi1g04348 179 FunFam E3 ubiquitin-protein ligase ATL6 67 157 - -
Vivi1g04348 179 Pfam Ring finger domain 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04348 Vivi-Chr1 92746074 92746758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04348 1 157 Rapid Response to Elicitors AT3G05200 34.659 9.70e-25 97.4