Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04342 ATGGAGCCATCACTTTGTGCCAATGGTTGTGGATTTTATGGATCTCCTTCAAACAAGAATCTATGTTCAAAGTGTTTCAACCAATATGTCAAAGAAAATATTGCTAAATTTAGCGAGAATGAATCAACATCTTCTTATCTTTCAAAGAATCTTAGTACTAATGATATTTACGATGGTGTGGAAGCTATTTCTCTCAATGACAACGAAAACATGAAGAAGAAGAAAAATAGGTGCAAGAGTTGCAACAAGAAAGTGGGACTTATAGGGTTCGAGTGTCGTTGTGGAGATGTGTTTTGTGGAATGCATAGATATCCAGAAGAACATACTTGCAAAGTGAATTTAAAGAATATTGGTCGCCAAGTATTAGAAAAACAAAACCCTTTATGTATGAGTGATAAATTAGAACACCGTATCTAA 417 0.3429 MEPSLCANGCGFYGSPSNKNLCSKCFNQYVKENIAKFSENESTSSYLSKNLSTNDIYDGVEAISLNDNENMKKKKNRCKSCNKKVGLIGFECRCGDVFCGMHRYPEEHTCKVNLKNIGRQVLEKQNPLCMSDKLEHRI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04342 138 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 135 - -
Vivi1g04342 138 Gene3D - 1 52 - -
Vivi1g04342 138 ProSiteProfiles Zinc finger AN1-type profile. 72 118 IPR000058 GO:0008270
Vivi1g04342 138 SMART AN1_Zf_4 78 115 IPR000058 GO:0008270
Vivi1g04342 138 SUPERFAMILY AN1-like Zinc finger 66 132 IPR035896 -
Vivi1g04342 138 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Vivi1g04342 138 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 33 - -
Vivi1g04342 138 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Vivi1g04342 138 FunFam Zinc finger AN1-type containing 6 53 133 - -
Vivi1g04342 138 Pfam AN1-like Zinc finger 78 111 IPR000058 GO:0008270
Vivi1g04342 138 Gene3D - 59 132 IPR035896 -
Vivi1g04342 138 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04342 Vivi-Chr1 92717973 92718435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04342 5 135 C2H2 Transcription Factor Family AT3G52800 37.662 8.60e-27 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04342 - - tpra:123902604 202.216