Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04341 ATGGCTCCATCGGCGGAACACAATGCCGACTCCTCAACCGGCGACTCTCAAAGATTAACTCCGACACCGTTCATCGCTAAGACCTACCAGATCGTTGATGATCCCACCATCGACGACGTCGTTTCGTGGAACGAAACTGGAACATCGTTCGTCGTTTGGAACCCTACCGTTTTCGCGAGAGATTTGCTTCCCAAATATTTCAAGCACAATAATTTCTCCAGCTTCGTTCGTCAACTCAATACTTATGGATTTAAAAAAGTTGTGCCTGATCGATGGGAATTCTCTAACGAATGTTTTCGAAGAGGTGAGAAACGTCTTCTATCTGATATTCAGCGACGGAAAATCGTTTCAAAATCGCCGCCGGCCGTTATCAATGGCGGTGCGACTCCGACAGCAGCAGTGTCGTCGGTTTCAATTCCGACCTCAAAGCCGACCGTATCGCCGTCAATTTCGGGAGAGGAGCAGGTGATTTCTTCGGATTCGTCGCCGTCGTTTGAGCAGGCGGCGCTAATAGAAGAAAACGAGAGGCTTAGAAAGGAGAACATGCAGTTAACGACGGAAATAGAGGATATGAAATCCCTCTTCAATAATATTTACAATCTTATGTCTAATTATGCCAAATTTCAAGCGGAAAGCGGTGCACAAGGAAAAGAGTGTTGCTCGACTGTAACGAAGACATTTAATTTAATGCCGGAGAAGCGGTGCGATGGCGAAGATGCGGCGGGGATGGTGTTGGATGATTATTACCCGAAGCTGTTTGGTGTGGCGATAGGTACCAAGCGAGCGAGAGAAGAAGGAAAGTGTGTTGGGGATATCAGAGTCGTTTGA 828 0.4722 MAPSAEHNADSSTGDSQRLTPTPFIAKTYQIVDDPTIDDVVSWNETGTSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNECFRRGEKRLLSDIQRRKIVSKSPPAVINGGATPTAAVSSVSIPTSKPTVSPSISGEEQVISSDSSPSFEQAALIEENERLRKENMQLTTEIEDMKSLFNNIYNLMSNYAKFQAESGAQGKECCSTVTKTFNLMPEKRCDGEDAAGMVLDDYYPKLFGVAIGTKRAREEGKCVGDIRVV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04341 275 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g04341 275 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g04341 275 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g04341 275 Coils Coil 167 194 - -
Vivi1g04341 275 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 207 IPR027725 -
Vivi1g04341 275 Gene3D - 16 114 IPR036388 -
Vivi1g04341 275 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g04341 275 FunFam Heat stress transcription factor B-4 16 114 - -
Vivi1g04341 275 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Vivi1g04341 275 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g04341 275 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04341 Vivi-Chr1 92710783 92712062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04341 16 275 HSF AT5G62020 49.091 3.23e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi1g04341 HSF_DNA-bind 1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04341 K09419 - gmx:100780987 325.094