Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04340 ATGGCTTCATCGGTGGAACACAATGGCGACTCCTCAACCGGCGAGTCTCAAAGATCAACTCCGACACCGTTTATCACCAAGACGTACCAGATCGTTAATGATTGCACCATCGACGACGTCGTTTCATGGAATGATAGTGGAACATCGTTCGTCGTTTGGAACCCTACCGTTTTCGCCAGAGATTTGCTTCCTAAATATTTCAAGCACAATAATTTCTCCAGCTTCGTTCGTCAACTCAATACTTATGGATTTAAAAAAGTTGTGCCTGATCGGTGGGAATTCTGCAATGAATTCTTTCGAAGAGGTGAGAAACGGCTTCTATGTGATATTCAGCGACGGAAAATCGTTTCAAAATCGCCGTCGGTGGCTACCAGTTCCGGTGTAACTGCGTCTGCCACAGCAGCGGTTTTAATTCCGACTGCAAAGCCGATCGTTTCGCCGTCAATTTCGGGAGAGGAGCAGGTGGTATCTTCGGATAATTCGTCGCCATTTGAGCAGGCGGCACTGTTAGAAGAGAACGAGAGGCTTAGAAATGAGAACATGCAGTTAAGGACGGAAATAGAGGACATGAAATCCCTCTTCAATAATATATTCAATCTTATGTCTAATTATGCCAAATTTCAAGTGGAAAGCGGTGCACAAGGAAAAGAGTGTTGCTCCACCCCAACGAAAACGCTTCATCCATTGCCGGAGAAGCGGTGCGATGGCGAAGATGCGGCGGAGATGGTGGTGGATGATAATTATCCGAAGCTGTTTGGGGTGGCGATAGGTAGGAAGCGAACGAGAGAAGAAGAGAAGTGTGTTGATGATAATACAGTGTTTAGCCTGAATCAATCAGTTCACATGGACGAGAGAATTCGGAGTCGTTTGATTTGCCGAAATGTGTAA 888 0.4583 MASSVEHNGDSSTGESQRSTPTPFITKTYQIVNDCTIDDVVSWNDSGTSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFCNEFFRRGEKRLLCDIQRRKIVSKSPSVATSSGVTASATAAVLIPTAKPIVSPSISGEEQVVSSDNSSPFEQAALLEENERLRNENMQLRTEIEDMKSLFNNIFNLMSNYAKFQVESGAQGKECCSTPTKTLHPLPEKRCDGEDAAEMVVDDNYPKLFGVAIGRKRTREEEKCVDDNTVFSLNQSVHMDERIRSRLICRNV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04340 295 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g04340 295 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 208 IPR027725 -
Vivi1g04340 295 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g04340 295 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Vivi1g04340 295 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g04340 295 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g04340 295 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g04340 295 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g04340 295 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g04340 295 Coils Coil 166 193 - -
Vivi1g04340 295 FunFam Heat stress transcription factor B-4 16 114 - -
Vivi1g04340 295 Gene3D - 16 114 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04340 Vivi-Chr1 92701853 92703229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04340 13 277 HSF AT5G62020 50.000 4.50e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi1g04340 HSF_DNA-bind 6.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04340 K09419 - gmx:100780987 311.227