Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04339 ATGGCTTTTCCTTTTAACATTCTTGTTCTCTCGTACCTTGTCGTGTTCCATTCATGTTACGCCATTGGAGACAAAAATGAACACAACCCAGAAAAGCTTTCACTACTTTCTTTTAAAGGGTCTCTTCAAAACTCTCACTTTCTTTCTTCATGGCACTCTGCAACTCCTCACTGTAACTGGGTTGGTGTCACGTGTCAACTCGGACGAGTCACCTCGCTCTCTCTTCCTTCTCGTTACCTTAAAGGCAATCTCTCTTTGTCTCTTTCGTCTCTCTCCTTTCTTACCATCCTCAACCTTGAGGATAATCAGTTTTCCGGCGAAATCCCCGGTGAGGTTGGTCGGTTGTTTAACCTGAAAACTCTTAGACTCGGTTCCAACTCGTTCTCCGGGAAGATTCCACCGGAGTTTGGGGTTCTAACGAAGCTTCACACGCTTGACCTCTCCGGTAATGCACTCGTCGGAGAAATACCGGAGAGTTTCGGGAACTTGACCAACCTTCAGTTTCTGGACCTTAGTAACAACATTCTCTCAGGTTCTCTTCCGTTAACTCTTTTCACCGGAAAAGTTTCTTTGATTTCTGTTGATATTTCGAACAACTCGTTTTCCGGCGAGCTTCCGTCGGAAATCGGAAACTGGAAGAATCTCACTGCACTTTACGTTGGGATAAACAAGTTGTCTGGTACATTGCCTAAGGAAATCGGAAAGCTTTCGAAGCTTGAAATTTTGTATTCACCTTCTTGTTTGATCGAAGGTCCATTACCTGTAGAAATGGAGAACCTGAAATCGTTGACTAAACTTGACCTTTCTTATAACCCTTTGAGATGTTCAATCCCAAAGTTTATTGGGAAGTTGAAAAATTTGAAAATTTTGAACCTTGTCTTTTCTGAGCTTAATGGGTCAGTTCCATCAGAGCTTGGAAACTGTTCAAATTTAACTTCTGTGATGCTTTCTTTCAATTCACTTTCTGGTTCACTGCCTCAAGAGCTTTCTGAGCTTCCTATAAGAACCTTTTCAGCTGAAAAGAATCTTCTCCATGGTCCTCTGCCTTCTTGGCTTGGGAAGTGGACTAATGTTGATTCTCTTTTGCTTTCGGCTAATCGGTTTTCGGGTGTGATTCCGCCCGAGCTTGGGAATTGTTCTGTGATGGAGCATCTCAGTTTGAGTAGTAACTTGTTGACTGGTCCTATACCTGAGGAGCTTTGTAATGCTGCTTCACTTTTGGAGATTGATCTTGATGATAATTATCTTAGTGGAACAATTGAGAAGGCTTTTGTTAATTGTAAGAACCTTACTCAGTTGGTTTTGATGAATAATCAGATTGTTGGTTCCATTCCGAAGTACCTTTCCGAGCTTCCGTTGATGGTGTTGGACTTGGACAACAACAATTTCAGTGGAAAGATACCTTCTAGTTTGTGGAATTTATCGACTTTGATGGAGTTTTCCGCCGCGAATAACCACTTGGAAGGTTCTCTTCCTGTGGAGATTGGGAGTGCGGTAATTCTACAAAGGCTTGTTCTTAGCAATAATCGTCTTAAAGGTACTATTCCGAAGGAAATTGGTAGTCTTCAAAGTCTTTCAGTTTTTAATTTGAATGGAAACAGACTTGAAGGAAACATTCCGACCGAGCTTGGCGATTGCGTTTCACTCACTACATTGGACCTTGGAAACAATCAACTCAATGGCTCCATTCCTGACAAATTGGTGGAACTAAGTGAATTACAGTGCCTAGTTCTTTCTCACAATAATCTCTCAGGGTCTATTCCTTCCAAGGAATCTTCTTATTTTCGGCAACTTACCGTTCCTGATTTGAGCTTTGTTCAACATCTTGGTGTGTTTGATCTCTCTCACAATAGATTGTCTGGCACCATACCTGATGAATTGGGAAGCTGTGTAGTAGTTGTGGATCTATTGCTTAGCAACAACATGCTTACTGGGAGCATTCCGAGATCACTCTCGCGTTTGACGAATCTAACAACTCTGGATTTGTCCGGAAACTTGTTGTCCGGTTCCATTCCAGCAGAGCTTGGAGATGCTGCCACACTCCAAGGTTTATATTTGGGACATAATCAACTCTCGGGTACAATCCCTGGTAGTTTCGGAAAGTTAACCGGTTTGGTGAAGCTGAATTTGACAGGAAATATGCTGTTTGGTTCAATTCCAAATAGTTTTGGGAATATGAAGGAGTTAACTCACTTGGACTTGAGCTATAACGTGCTCAGTGGCGAGCTTCCATCAATCATGTCAGGCGTGCAAAGCCTTGTCGGTCTTTATGTGCAGAATAACAGGCTTTCAGGCCATGTCGGGGAGCTTTTCTCAAACTCCATGACATGGAGGATTGAAACAATGAATTTAAGTCACAACTGCTTCGATGGAAACTTGCCGTGGTCTTTGGGAAATCTGTCCTATTTGACAATTTTAGATCTTCATCAAAATCAGTTGTCCGGTGAGATTCCCTCCGACCTTGGGAATCTAATGCAGCTAGAGTATTTTGATGTCTCGGTTAATCAATTATCTGGAAAGATTCCAGAGAAGCTATGCAGCTTAGTAAATTTGAATTACCTAGATCTGTCTCAAAACAGATTGGAAGGGCCTATTCCAAGAACCGGTGTTTGCCAAAACCTTTCGAAGGTTAGATTTGCAGGAAACATAAACCTTTGTGGCCAAATGTTGGGTACAAATTGTGAGGTCAAAAGCATCAGTAGATATGCATCGTTTAATGCATGGAGGCTTGGTGGAATCACCATTACGGTTATATTAATAACCTTGATCTTTGCTTTTGTTTTGCATAGATGGATTAGCAGGAAGCAAAATGATCCTGAGGAACTCGACGATCGCAAACTGAATAGTTTTTTGGATCAAAATCTTTACTTCTTGAGCAGTAGCAAATCAAAGGAACCTTTGAGCATCAATGTCGCAATGTTTGAGCAGCCTCTTTTGAAATTAACTTTGGTCGATATCCTCAAAGCTACCGATAATTTCAGCAAGACAAACATAATCGGAGACGGAGGGTTCGGAACTGTGTATAGAGCTACTTTATCAAATGGAAGAACAGTTGCTGTGAAGAAGCTTAGTGAAGCTAAAACACAAGGTCATCGCGAATTCATGGCTGAAATGGAAACCTTAGGAAAGGTTAAGCATCAAAACCTAGTTTCATTGCTTGGATATTGCTCAATGTGTGAGGAAAAACTCCTTGTTTATGAATACATGGTAAATGGAAGCTTAGACCTTTGGTTGAGAAATAGGACTGGCGGACTCGAGATCCTTGATTGGAACAAACGTTACAAAATTGCAACCGGTGCGGCAAAAGGGTTGGCTTTCCTTCATCATGGTTTCATACCTCACATCATTCACAGAGATGTGAAAGCTAGCAACATTTTACTGAATGAAGATTTTGAGCCAAAAGTCGCCGATTTCGGACTCGCAAGATTGATCAGTGCTTGCGAAACTCATATCTCTACCGATATTGCTGGAACATTCGGTTACATTCCACCAGAGTATGGACAGAGTGGAAGATCAACAACAAGAGGCGATGTCTACAGTTTCGGTGTCATTTTGCTTGAACTCGTGACCGGGAAAGAGCCGACAGGACCAGATTTCAAAGAGATAGAAGGCGGAAACTTGGTTGGATGGGTTGGTCAGAAGATCAAGAAGGGTCAGGCTGCTGTTGTTCTTGATCCAACGGTTCTCGACGCGGATTCGAAGCAGATGATGCTTCAAATGCTGCAGATTGCTTGTGTTTGTCTCTCTGATAATCCGGCAAACAGGCCTACCATGTTTCAAGTGCACAAATTCTTGAAGGGGATGAAAGGAGATGAGTGA 3819 0.4211 MAFPFNILVLSYLVVFHSCYAIGDKNEHNPEKLSLLSFKGSLQNSHFLSSWHSATPHCNWVGVTCQLGRVTSLSLPSRYLKGNLSLSLSSLSFLTILNLEDNQFSGEIPGEVGRLFNLKTLRLGSNSFSGKIPPEFGVLTKLHTLDLSGNALVGEIPESFGNLTNLQFLDLSNNILSGSLPLTLFTGKVSLISVDISNNSFSGELPSEIGNWKNLTALYVGINKLSGTLPKEIGKLSKLEILYSPSCLIEGPLPVEMENLKSLTKLDLSYNPLRCSIPKFIGKLKNLKILNLVFSELNGSVPSELGNCSNLTSVMLSFNSLSGSLPQELSELPIRTFSAEKNLLHGPLPSWLGKWTNVDSLLLSANRFSGVIPPELGNCSVMEHLSLSSNLLTGPIPEELCNAASLLEIDLDDNYLSGTIEKAFVNCKNLTQLVLMNNQIVGSIPKYLSELPLMVLDLDNNNFSGKIPSSLWNLSTLMEFSAANNHLEGSLPVEIGSAVILQRLVLSNNRLKGTIPKEIGSLQSLSVFNLNGNRLEGNIPTELGDCVSLTTLDLGNNQLNGSIPDKLVELSELQCLVLSHNNLSGSIPSKESSYFRQLTVPDLSFVQHLGVFDLSHNRLSGTIPDELGSCVVVVDLLLSNNMLTGSIPRSLSRLTNLTTLDLSGNLLSGSIPAELGDAATLQGLYLGHNQLSGTIPGSFGKLTGLVKLNLTGNMLFGSIPNSFGNMKELTHLDLSYNVLSGELPSIMSGVQSLVGLYVQNNRLSGHVGELFSNSMTWRIETMNLSHNCFDGNLPWSLGNLSYLTILDLHQNQLSGEIPSDLGNLMQLEYFDVSVNQLSGKIPEKLCSLVNLNYLDLSQNRLEGPIPRTGVCQNLSKVRFAGNINLCGQMLGTNCEVKSISRYASFNAWRLGGITITVILITLIFAFVLHRWISRKQNDPEELDDRKLNSFLDQNLYFLSSSKSKEPLSINVAMFEQPLLKLTLVDILKATDNFSKTNIIGDGGFGTVYRATLSNGRTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVSLLGYCSMCEEKLLVYEYMVNGSLDLWLRNRTGGLEILDWNKRYKIATGAAKGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHISTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVGQKIKKGQAAVVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMFQVHKFLKGMKGDE 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04339 1272 Pfam Leucine Rich Repeat 705 725 IPR001611 GO:0005515
Vivi1g04339 1272 Pfam Leucine Rich Repeat 262 284 IPR001611 GO:0005515
Vivi1g04339 1272 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 602 898 - -
Vivi1g04339 1272 PRINTS Leucine-rich repeat signature 848 861 - -
Vivi1g04339 1272 PRINTS Leucine-rich repeat signature 549 562 - -
Vivi1g04339 1272 SUPERFAMILY L domain-like 595 887 - -
Vivi1g04339 1272 FunFam serine/threonine-protein kinase BRI1-like 2 1069 1272 - -
Vivi1g04339 1272 SMART serkin_6 993 1265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04339 1272 SUPERFAMILY RNI-like 277 333 - -
Vivi1g04339 1272 Pfam Protein tyrosine and serine/threonine kinase 996 1265 IPR001245 GO:0004672|GO:0006468
Vivi1g04339 1272 ProSiteProfiles Protein kinase domain profile. 993 1265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04339 1272 ProSitePatterns Protein kinases ATP-binding region signature. 999 1022 IPR017441 GO:0005524
Vivi1g04339 1272 SUPERFAMILY Protein kinase-like (PK-like) 974 1265 IPR011009 -
Vivi1g04339 1272 FunFam serine/threonine-protein kinase BRI1-like 2 954 1068 - -
Vivi1g04339 1272 Pfam Leucine rich repeat 117 174 IPR001611 GO:0005515
Vivi1g04339 1272 Pfam Leucine rich repeat 501 559 IPR001611 GO:0005515
Vivi1g04339 1272 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 28 181 - -
Vivi1g04339 1272 Gene3D Ribonuclease Inhibitor 596 897 IPR032675 -
Vivi1g04339 1272 Gene3D Ribonuclease Inhibitor 187 333 IPR032675 -
Vivi1g04339 1272 Gene3D Ribonuclease Inhibitor 334 595 IPR032675 -
Vivi1g04339 1272 SMART LRR_typ_2 570 594 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 800 824 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 702 725 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 848 873 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 750 773 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 139 162 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 606 630 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 260 284 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 522 546 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 163 187 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 654 678 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 726 749 IPR003591 -
Vivi1g04339 1272 SMART LRR_typ_2 91 115 IPR003591 -
Vivi1g04339 1272 Gene3D Transferase(Phosphotransferase) domain 1 1069 1270 - -
Vivi1g04339 1272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1115 1127 IPR008271 GO:0004672|GO:0006468
Vivi1g04339 1272 Gene3D Phosphorylase Kinase; domain 1 956 1068 - -
Vivi1g04339 1272 SUPERFAMILY L domain-like 336 604 - -
Vivi1g04339 1272 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Vivi1g04339 1272 SUPERFAMILY L domain-like 31 278 - -
Vivi1g04339 1272 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 65 184 - -
Vivi1g04339 1272 FunFam leucine-rich repeat receptor protein kinase EMS1 185 335 - -
Vivi1g04339 1272 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Vivi1g04339 1272 FunFam Leucine-rich repeat receptor protein kinase EMS1 336 595 - -
Vivi1g04339 1272 SMART LRR_sd22_2 260 285 - -
Vivi1g04339 1272 SMART LRR_sd22_2 800 823 - -
Vivi1g04339 1272 SMART LRR_sd22_2 848 876 - -
Vivi1g04339 1272 SMART LRR_sd22_2 726 752 - -
Vivi1g04339 1272 SMART LRR_sd22_2 654 675 - -
Vivi1g04339 1272 SMART LRR_sd22_2 139 165 - -
Vivi1g04339 1272 SMART LRR_sd22_2 546 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04339 Vivi-Chr1 92679461 92683639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04339 31 1266 Receptor kinase-like Gene Family AT5G07280 59.340 0.0 1396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vivi1g04339 PK_Tyr_Ser-Thr 7.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04339 - - gmx:100780446 2081.6