Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04336 ATGGGTTTTGAAAGTGGGATTATTTACTGTTCAATGCAAAATTCTTCTACCTTCTTCTCAACTCAAAGAAACATGGAGGGTCGGGGTGAGATCGGTCTTACCGGTGATGGTTTAGATACTAGTATGATTGGGAGAATGAGGGAAGATGAGTATGAAAGCCGGTCGGGAAGTGATAACTTTGAACTCGATGGAATGTCTGGTGATGAACAAGATGGTGGCGATGATCAGCGCAAGAGGAAGAAGAGATACCATAGACACACTCCTAATCAAATTCAAGAGCTTGAAAGTTTCTTCAAAGAGTGTCCTCATCCTGATGAAAAACAAAGGTTGGATCTTAGTAGGAGACTTGGCTTGGAAAATAAACAAGTTAAGTTCTGGTTTCAGAATCGCCGAACCCAAATGAAGACTCAACTGGAAAGACATGAAAACATAATGCTTAAGCAGGAAAATGACAAGCTAAGAGGGGAGAATAATATAATGAAAGATGCAATGGTAAATCCAATATGTAACAACTGCGGTGGGCCAGCGATTCCCGGTCAGATTTTGTTTGAAGAGCACCAGATTAGAATCGAAAATGCCCGGCTAAAGGATGAATTGAATCGTATATGTGCTTTAACGAACAAGTTTCTCGGCAAACCGATATCATCAATGGCTAATCCCATGGCTCTATCAGCCTCAAATTCAGGTCTGGAACTTGGTATTGGAAGGAATGGTTATGGTGGTGGTTCGAGCTCTCTTGGCCCGTCCTTACCAATGGGACTTGATCTCGGAGATTGTTCTGCAATGCCTGGTATTAGATCACCAATGGGAATGATGGGAAATAGTAATGACATTCAGCTTGAGAGATCGGTGCTTATAGATCTTGCATTAGCTGCTATGGATGAACTATTAAAGATGGCTCAGCCAGATAGTCCTATTTGGATTAAGGGTTTGGACGGAGAGAGGGATATACTGAATCAAGAAGAGTATGCAAGGTTTTCTTCTTGCATTGGTCCGAAACCTCCGGGTTTTGTCGCCGAAGCTACGAGAGAAACCGGCATAGTAATCATCAACAGTTCAGCCCTTATGGAAACTTTGATGGATGCGAATCGATATGCAGACATGTTTCAGTCAATGATTGCTAGATCCATAAACCTTGATGTTTTATCTGGTGGCATTGGTGGAACCAGAAATGGTGCTATACATTTGATGCATGCTGAGGTTCAATTACTTTCACCATTAGTTCCGGTTCGTCCAGTGAGAATTCTGCGCTTCTGTAAGCAACATGCAGAAGGTGTATGGGCCGTGGTTGATGTTTCTGTTGAGATGGGTCATGATGCTAATTCTCAACCATTTATTAGCTGTAGAAGACTTCCTTCAGGATGTATTGTGCAGGATATGCCAAATGGTTATTCCAAGGTAACTTGGATTGAGCATTGGGAGTATGATGAGAGTGTTGTTCATCAACTCTATCGTCCATTGCTTATTTCCGGTATTGGATTCGGTGCTCATAGATGGATCGCCACTCTCCAAAGGCAGTGTGAAGGTTTGGCTATCCTTTTGTCGTCGTCCATTTCAAGTGACGATCACACAGCACTGAGCCAAGCTGGAAGAAGAAGCATGCTGAAGCTGGCACAACGCATGACGAATAATTTTTGTTCCGGGGTTTGTGCTTCATCTGCGAGGAAGTGGGATAGCCTTCAAATGGGGACCTTGAGTGATGATATGAGAGTTATGACTAGGAAAAATATTGATGACCCTGGCGAGCCTCCCGGTATTGTGCTCAGCGCAGCAACATCTGTTTGGATGCCTGTTTCAAGACAAAGAGTGTTTGATTTTCTACGTGATGAACGGCTTAGAAGCGAGTGGGACATTTTGTCAAATGGCGGACCAATGCAAGAAATGGTTCACATTGCCAAAGGTCAAGGACAAGGAAATTGTGTTTCTCTCCTACGTGCTAATGCTGTTAACGCGAATGATAGCAGCATGTTGATTCTGCAAGAGACATGGATGGATACATCGTGTTCGGTTGTGGTGTATGCACCGGTTGACGCACAATCATTGAACGTAGTAATGAGCGGTGGGGATTCTGCATATGTTGCACTCTTGCCTTCAGGCTTTGCCATTGTTCCTGATGGTAGTAATTCCTCTAGCTATGGTTCATCAAGCGAGACTTCACAGAAAGGCAACGGAGGCGACAATGGTGGAAGCTTGCTAACCGTCGGGTTCCAAATTTTGGTCAATAGTCTTCCAACCGCCAAGCTCACAATGGAATCAGTTGATACCGTGAATAATCTCATCTCGTGCACCATTCAGAAGATCAAAGCTGCGCTTAGAGTTGCATAA 2325 0.437 MGFESGIIYCSMQNSSTFFSTQRNMEGRGEIGLTGDGLDTSMIGRMREDEYESRSGSDNFELDGMSGDEQDGGDDQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSRRLGLENKQVKFWFQNRRTQMKTQLERHENIMLKQENDKLRGENNIMKDAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSMANPMALSASNSGLELGIGRNGYGGGSSSLGPSLPMGLDLGDCSAMPGIRSPMGMMGNSNDIQLERSVLIDLALAAMDELLKMAQPDSPIWIKGLDGERDILNQEEYARFSSCIGPKPPGFVAEATRETGIVIINSSALMETLMDANRYADMFQSMIARSINLDVLSGGIGGTRNGAIHLMHAEVQLLSPLVPVRPVRILRFCKQHAEGVWAVVDVSVEMGHDANSQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHQLYRPLLISGIGFGAHRWIATLQRQCEGLAILLSSSISSDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNIDDPGEPPGIVLSAATSVWMPVSRQRVFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDAQSLNVVMSGGDSAYVALLPSGFAIVPDGSNSSSYGSSSETSQKGNGGDNGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLISCTIQKIKAALRVA 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04336 774 ProSiteProfiles START domain profile. 278 512 IPR002913 GO:0008289
Vivi1g04336 774 SUPERFAMILY Homeodomain-like 65 137 IPR009057 -
Vivi1g04336 774 SUPERFAMILY Bet v1-like 281 509 - -
Vivi1g04336 774 SMART HOX_1 78 141 IPR001356 GO:0003677
Vivi1g04336 774 FunFam Homeobox-leucine zipper protein HDG1 66 153 - -
Vivi1g04336 774 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 76 771 IPR042160 -
Vivi1g04336 774 Pfam START domain 288 508 IPR002913 GO:0008289
Vivi1g04336 774 CDD START_ArGLABRA2_like 282 508 - -
Vivi1g04336 774 Pfam Homeodomain 80 135 IPR001356 GO:0003677
Vivi1g04336 774 CDD homeodomain 79 137 IPR001356 GO:0003677
Vivi1g04336 774 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Vivi1g04336 774 Coils Coil 131 151 - -
Vivi1g04336 774 SUPERFAMILY Bet v1-like 536 768 - -
Vivi1g04336 774 Gene3D - 67 152 - -
Vivi1g04336 774 SMART START_1 287 509 IPR002913 GO:0008289
Vivi1g04336 774 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Vivi1g04336 774 MobiDBLite consensus disorder prediction 48 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04336 Vivi-Chr1 92565986 92571419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04336 25 771 Homeobox Transcription Factor Family AT3G61150 60.132 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1g04336 START 4e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04336 K09338 - gmx:100785102 1231.47