Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04317 ATGACACCTCACTTTTGGATTCTTGTTCTTGACACCAATTTGTTTAATACACAAGGATTTGCTTTTATTTATATGGAAGATGAGAGAGATGCTGATGCTGCAATTCGTGCCCTCGATCGGATTGAGTTTGGTCGGAAGGGCCGTAGACTCCGTGTAGAATGGACAAAGCAAGAACGTGGTATCCGAAGGCCTGCTGAGCGCCCAAAAAGATCTTCACGTGATGGGAGACCTTCAAAGACCTTATTTGTAATTAATTTTGATACAAACCATACCAGAACAAGGGACTTGGAGAGACATTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGGAGGAATTTTGCATTTGTTCAGTATGAATCTGAAGATGATGCTTCCAAAGCACTGGAAGCTACAAATATGAGCAAGTTGTTGGATCGGGTTATTTCAGTTGAATTTGCTGCTAGAGATGACGATGTCAGGCGAAATGGACATAGCCCGGAGAGAAGCCATGATCGTCAGCGTGACAGAAGCCGTGATGGAAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTACGGCCATGGGCCTAGTCCATATAAGAGGCAGAGGAGCAGCCCTGATTATGGGCATGGCAACAGCCGTAGTAGAAGCCCCTATCGAAGAGAGCGAGGTAGCCCTGCTTACGTGCGTCGAAGCATTAGTCCTTACAGAAGAGAGAGGGATGGTTCTGAGCCTGTTCGTGACAACAGCCGCAGTCCTTATCACAAAGAGCGGGGGAGAACCAACCGGTCTCCCTCTTATAGTCTCGAAGAAGGAGAGAGGATAGACCCTCCAAAAGGTCATGGATCTGACCATAGTCCTGAAGAGGGAGAGAGGACAGACCCTAAAAAAGATCATGGGTCTGACCATAGTCTCGAAGAGGGAGAGAGGATAGACCCTAAAAAAGATCATGAATCTGACCATAGTCCTTATGATGCTGTGAAGGATAGCTCTGAAAATGGCCATTACAAGAGGCACAGTACTGATGCAATTGGGAACTCCAGCCCATACAATGATTCTAGAGGGAGTCCTAGGCCTGATGCAAAAGTGGACCCCAAACCATACAATGATTATGGAGGGAGCCCAAATACTATGCCTGAACCCAGACACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATTCGTGAACAGTATCGCAGCCAGAGCCAGTCACCCCCTGCAGAAGAATGA 1227 0.4727 MTPHFWILVLDTNLFNTQGFAFIYMEDERDADAAIRALDRIEFGRKGRRLRVEWTKQERGIRRPAERPKRSSRDGRPSKTLFVINFDTNHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAARDDDVRRNGHSPERSHDRQRDRSRDGRRSPSPYRRERGSPDYGHGPSPYKRQRSSPDYGHGNSRSRSPYRRERGSPAYVRRSISPYRRERDGSEPVRDNSRSPYHKERGRTNRSPSYSLEEGERIDPPKGHGSDHSPEEGERTDPKKDHGSDHSLEEGERIDPKKDHESDHSPYDAVKDSSENGHYKRHSTDAIGNSSPYNDSRGSPRPDAKVDPKPYNDYGGSPNTMPEPRHSPNYGGPESPIREQYRSQSQSPPAEE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04317 408 MobiDBLite consensus disorder prediction 339 353 - -
Vivi1g04317 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 143 IPR000504 GO:0003723
Vivi1g04317 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 45 IPR000504 GO:0003723
Vivi1g04317 408 SMART rrm1_1 80 146 IPR000504 GO:0003723
Vivi1g04317 408 SUPERFAMILY RNA-binding domain, RBD 17 71 IPR035979 GO:0003676
Vivi1g04317 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 150 IPR000504 GO:0003723
Vivi1g04317 408 Gene3D - 7 66 IPR012677 -
Vivi1g04317 408 MobiDBLite consensus disorder prediction 153 408 - -
Vivi1g04317 408 Gene3D - 67 165 IPR012677 -
Vivi1g04317 408 FunFam Serine/arginine-rich splicing factor RS31 71 161 - -
Vivi1g04317 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 57 IPR000504 GO:0003723
Vivi1g04317 408 MobiDBLite consensus disorder prediction 58 76 - -
Vivi1g04317 408 MobiDBLite consensus disorder prediction 213 338 - -
Vivi1g04317 408 SUPERFAMILY RNA-binding domain, RBD 62 157 IPR035979 GO:0003676
Vivi1g04317 408 MobiDBLite consensus disorder prediction 394 408 - -
Vivi1g04317 408 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 20 94 - -
Vivi1g04317 408 MobiDBLite consensus disorder prediction 58 78 - -
Vivi1g04317 408 MobiDBLite consensus disorder prediction 153 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04317 Vivi-Chr1 91916463 91920698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04317 78 158 Eukaryotic Initiation Factors Gene Family AT1G49760 31.461 3.86e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04317 K12893 - gmx:100796509 473.781