Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04316 ATGAAAGCAATTTTCTGTGGAAATTTTGAATATGATTGCCGGGAGTCTGAGCTGGAGCGGCTTTTTAGACGATATGGCAAGGTTGATAGGGTGGATATGAAGGCTGGATTTGCTTTTATTTATATGGAAGATGAGAGAGATGCTGATGCTGCAATTCGTGCCCTCGATCGGATTGAGTTTGGTCGGAAGGGCCGTAGACTCCGTGTAGAATGGACAAAGCAAGAACGTGGTATCCGAAGGCCTGCTGAGCGCCCAAAAAGATCTTCACGTGATGGGAGACCTTCAAAGACCTTATTTGTAATTAATTTTGATACAAACCATACCAGAACAAGGGACTTGGAGAGACATTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGGAGGAATTTTGCATTTGTTCAGTATGAATCTGAAGATGATGCTTCCAAAGCACTGGAAGCTACAAATATGAGCAAGTTGTTGGATCGGGTTATTTCAGTTGAATTTGCTGCTAGAGATGACGATGTCAGGCGAAATGGACATAGCCCGGAGAGAAGCCATGATCGTCAGCGTGACAGAAGCCGTGATGGAAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTACGGCCATGGGCCTAGTCCATATAAGAGGCAGAGGAGCAGCCCTGATTATGGGCATGGCAACAGCCGTAGTAGAAGCCCCTATCGAAGAGAGCGAGGTAGCCCTGCTTACGTGCGTCGAAGCATTAGTCCTTACAGAAGAGAGAGGGATGGTTCTGAGCCTGTTCGTGACAACAGCCGCAGTCCTTATCACAAAGAGCGGGGGAGAACCAACCGGTCTCCCTCTTATAGTCTCGAAGAAGGAGAGAGGATAGACCCTCCAAAAGGTCATGGATCTGACCATAGTCCTGAAGAGGGAGAGAGGACAGACCCTAAAAAAGATCATGGGTCTGACCATAGTCTCGAAGAGGGAGAGAGGATAGACCCTAAAAAAGATCATGAATCTGACCATAGTCCTTATGATGCTGTGAAGGATAGCTCTGAAAATGGCCATTACAAGAGGCACAGTACTGATGCAATTGGGAACTCCAGCCCATACAATGATTCTAGAGGGAGTCCTAGGCCTGATGCAAAAGTGGACCCCAAACCATACAATGATTATGGAGGGAGCCCAAATACTATGCCTGAACCCAGACACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATTCGTGAACAGTATCGCAGCCAGAGCCAGTCACCCCCTGCAGAAGAATGA 1278 0.475 MKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDADAAIRALDRIEFGRKGRRLRVEWTKQERGIRRPAERPKRSSRDGRPSKTLFVINFDTNHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAARDDDVRRNGHSPERSHDRQRDRSRDGRRSPSPYRRERGSPDYGHGPSPYKRQRSSPDYGHGNSRSRSPYRRERGSPAYVRRSISPYRRERDGSEPVRDNSRSPYHKERGRTNRSPSYSLEEGERIDPPKGHGSDHSPEEGERTDPKKDHGSDHSLEEGERIDPKKDHESDHSPYDAVKDSSENGHYKRHSTDAIGNSSPYNDSRGSPRPDAKVDPKPYNDYGGSPNTMPEPRHSPNYGGPESPIREQYRSQSQSPPAEE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04316 425 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Vivi1g04316 425 SUPERFAMILY RNA-binding domain, RBD 3 93 IPR035979 GO:0003676
Vivi1g04316 425 MobiDBLite consensus disorder prediction 411 425 - -
Vivi1g04316 425 MobiDBLite consensus disorder prediction 170 425 - -
Vivi1g04316 425 SUPERFAMILY RNA-binding domain, RBD 80 174 IPR035979 GO:0003676
Vivi1g04316 425 MobiDBLite consensus disorder prediction 356 370 - -
Vivi1g04316 425 MobiDBLite consensus disorder prediction 230 355 - -
Vivi1g04316 425 SMART rrm1_1 3 70 IPR000504 GO:0003723
Vivi1g04316 425 SMART rrm1_1 97 163 IPR000504 GO:0003723
Vivi1g04316 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Vivi1g04316 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Vivi1g04316 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Vivi1g04316 425 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 97 306 - -
Vivi1g04316 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Vivi1g04316 425 Gene3D - 1 86 IPR012677 -
Vivi1g04316 425 Gene3D - 87 182 IPR012677 -
Vivi1g04316 425 MobiDBLite consensus disorder prediction 170 207 - -
Vivi1g04316 425 FunFam Serine/arginine-rich splicing factor RS31 88 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04316 Vivi-Chr1 91915878 91920698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04316 95 175 Eukaryotic Initiation Factors Gene Family AT1G49760 31.461 4.77e-06 47.0