Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04313 ATGGATGGCACCAACCCTTATAACTCTCCAACAGTTCCACCACCACCTATACAACTTCCAAAAGTAGTAACATCTTCATCTGCACCAACAACTCCTTCATCTTCTTCAACAACTCCGGCCGTGACGGCCGGTGTTGTTGTTGGAAGATACCGTGGAACCAGATGTAGGAGTGGGAAATGGGTGTCTGAGATACGCGAGCCGCGTAAAACGAAGCGCATTTGGTTAGGAACATACCCTAGAGCAGAAATGGCAGCAGCTGCTTATGATGTTGCTGCTCTTGCTTTAAAAGGACCTGATACGACTCTTAACTTTCCGGATTCGGTGCTTTCTTACCCTATTCCTGCTTCTTTGTCTTCGACTGATATTCGTGCTGCGGCTGAAGCCGCTGCACAGGCGAAAATCATGAGAGTGAAACCACCTGATCAACTAGAACAAGGAAAACAACAGAAGCAAGAAAAAGAAAACGCTTCTGGTTTTGGTTTGGAGGGAAGTTCTTCAGCTAGTAGTGGAATGCAACAACAACAACAACAACAACAAAACCCTGGTTTTGATTTTGAGGGAAGCTCTTCAGCTAATAGTGGAATGCAACAACAACAAGGTTATGAATATGAATATATTGACGAGGATGAGTTGTTGAATATGCCGAATTTGTTGGACGATATGGCTAGAGGAATGCAGGTTAGTCCACCAAGGATGACACCGTTTTCAAATTATTCGTCGGATGATCATTCACCGAGGAATTCTGATGGAGGAGATGATAATCTTTGGAGTTACACTTTTTGA 783 0.4393 MDGTNPYNSPTVPPPPIQLPKVVTSSSAPTTPSSSSTTPAVTAGVVVGRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPRAEMAAAAYDVAALALKGPDTTLNFPDSVLSYPIPASLSSTDIRAAAEAAAQAKIMRVKPPDQLEQGKQQKQEKENASGFGLEGSSSASSGMQQQQQQQQNPGFDFEGSSSANSGMQQQQGYEYEYIDEDELLNMPNLLDDMARGMQVSPPRMTPFSNYSSDDHSPRNSDGGDDNLWSYTF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04313 260 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Vivi1g04313 260 ProSiteProfiles AP2/ERF domain profile. 41 105 IPR001471 GO:0003700|GO:0006355
Vivi1g04313 260 MobiDBLite consensus disorder prediction 230 260 - -
Vivi1g04313 260 MobiDBLite consensus disorder prediction 152 200 - -
Vivi1g04313 260 Pfam AP2 domain 54 97 IPR001471 GO:0003700|GO:0006355
Vivi1g04313 260 MobiDBLite consensus disorder prediction 21 41 - -
Vivi1g04313 260 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Vivi1g04313 260 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 30 225 - -
Vivi1g04313 260 MobiDBLite consensus disorder prediction 1 41 - -
Vivi1g04313 260 MobiDBLite consensus disorder prediction 140 260 - -
Vivi1g04313 260 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Vivi1g04313 260 SMART rav1_2 49 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04313 Vivi-Chr1 91849620 91851071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04313 50 258 AP2-EREBP Transcription Factor Family AT5G52020 47.619 4.89e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g04313 AP2 6.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04313 - - psat:127091780 350.132