Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04312 ATGTTTACCAATAATCAAATTTTGGAGTCACATGATCCATGTTCATCTTCAGAGAGGTATCTTAAGCCGAAGAAACCTGCGGGGAGGAAAAAGTTCAGAGAAACGCGCCACCCGGTTTACCGTGGAGTCAGAAAGAGGGATTCTGGCAAGTGGGTGTGTGAAGTGAGAGAGCCTAACAAGAAGACAAGAATCTGGCTAGGGACATTTATTACTCCTGAGATGGCGGCGCGTGCGCATGATGTTGCCGCGATTGCGCTTAGAGGAGAGTCTGCTTCTCTTAATTTTGCTGACTCTGCTTGGAGGTTACCGGTTCCTGCTACGTCGGATGCGAGAGATATTCAAAAGGCGGCGGCGGAGGCAGCGGAGGCTTTCCGGCCGGAGACTAAGTTTCAGAACAGTGAGTATAGCCAGGAGAGAAAGGATAATGAATCATCAACGGTGAAGGTGGAAGCGGCGGAGACAGCGATGGAGCAACGAGAGGAAGAAGAGGATACAGTGCCGGAGTATTTAAGAAACATGGTTCTTATGTCTCCTGCACGTTACTGGGGGAACGAGTTTTGTTTTGATGACGTGGATTTTGTAGATACTGAAGTTTCATTATGGACTTTCTGA 612 0.482 MFTNNQILESHDPCSSSERYLKPKKPAGRKKFRETRHPVYRGVRKRDSGKWVCEVREPNKKTRIWLGTFITPEMAARAHDVAAIALRGESASLNFADSAWRLPVPATSDARDIQKAAAEAAEAFRPETKFQNSEYSQERKDNESSTVKVEAAETAMEQREEEEDTVPEYLRNMVLMSPARYWGNEFCFDDVDFVDTEVSLWTF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04312 203 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Vivi1g04312 203 MobiDBLite consensus disorder prediction 132 147 - -
Vivi1g04312 203 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Vivi1g04312 203 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Vivi1g04312 203 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Vivi1g04312 203 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Vivi1g04312 203 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Vivi1g04312 203 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Vivi1g04312 203 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Vivi1g04312 203 MobiDBLite consensus disorder prediction 128 164 - -
Vivi1g04312 203 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 16 202 IPR045277 GO:0003700
Vivi1g04312 203 MobiDBLite consensus disorder prediction 1 33 - -
Vivi1g04312 203 Coils Coil 142 162 - -
Vivi1g04312 203 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04312 Vivi-Chr1 91823885 91825094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04312 23 203 AP2-EREBP Transcription Factor Family AT4G25470 56.614 4.22e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1g04312 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04312 - K09286 gmx:100101894 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05537 2 181634330 181635378 Vivi1g04312 1 91823885 91825094 ECH
Vivi1g04312 1 91823885 91825094 Vivi1g04312 1 91823885 91825094 ECH
Vivi2g05537 2 181634330 181635378 Vivi1g04312 1 91823885 91825094 PCT