Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04310 ATGGCTGTTGCCGAGAGGGGCAGCAGCAGCGAAGGCTCAACTTCATTCAATTGTTACAAAGTAGCAAACTTGACCGAAACCATATTGAACGCAAAGCAAACTTCCAATTTGAAAGACCGATACATTCTTGGGGAGCAGTTGGGCTGGGGACAATTTGGTGTCATTAGAACATGCTCAGACAAAACAACCGGAGAGGTTTTGGCATGCAAATCAATTGCTAAAGATAGGTTGGTGACTTCAGATGATATGCAAAGTGTTAAACTTGAGATCGAGATCATGGCAAAGTTGTCTGGGCACCCAAACGTTGTAGATCTTAAGGCAGTTTATGAAGAGGAAGATTTTGTTCACTTGGTGATGGAGCTTTGTGCTGGAGGGGAGCTGTTTCATTTGTTAGAGAAGCATGGGAGGTTTTCTGAATCTGAAGGCATGGTTCTCTTTAGACATCTAATGCAGATGGTTTTATACTGTCACGAAAACGGCGTTGTTCACCGAGATTTGAAGCCCGAAAACATTCTCTTAGCAACTAAATCCTTCTCGTCTCCAATTAAATTGGCCGACTTTGGTCTTGCGACCTACATTAAGCCTGGACAGAGTTTGCATGGTTTAGTTGGGAGTCCATTTTATATAGCTCCAGAGGTATTGGCGGGTGCATATAACCAGGCTGCGGATATTTGGAGTGCTGGGGTTATTCTTTACATTCTGTTGAGTGGGATGCCGCCGTTTTGGGGGAAGACAAAGTCGCGAATATTTGAAGCTGTTAAGGCTGCCGATTTGAGGTTCCCTCCTGAACCTTGGAGTCGGATCTCTGAATCTGCTAAGGATTTAATAAGGCGAATGCTTTGCGTAGAATCTTCTCAAAGGCTCACTGCCCAAGAGGTTTTGGACCATTGCTGGATGGAAAGTGATCCAACAAATCTGGAACAACTAAGTGAAAATAGAGTCGAAAATTGCGGAGAGTGGCATGTCGGCGGCGACTCATTCTCTTCATTTATGTCCAGAAATAATGACATCAGTTTTGGCGGTGGTTCACCTGCATGCGACGCTCAATCACCTATGTTCTCATGCAAATCATCGTTTTCTTCCATTTTCGTGGAACCAGTGACGCCTTTTTCTGCTTCTGGCGGGTTTTCATTTCAAAGCTCGGGAGGTCCAATTGGTTTGGAATTTTCTACTCCTGTTTCCTCTATGCCTAGCTTTGCATTTCTCAGCCCTAGTTCTTCTGTCGAGCAAAAGAGTCTTATATTCGAGTTCGATTCTAACGCGTCAGAAGTAAATGCTATTGCTAAAGATTCTCCTCTTTGCCTTGGAAATGATGTTAAAGAAAAGGATCACAAGCCTATAGAGACTAAAAGGGCATGCGGAACAAATTGTAACCGGACATTGGGATTCCACAGCAAGAGAAACCGGACAATTGGACTCGGCGAGTGTGAGCAACTTGATCTTGTGGTGACCGAATCCGTCATTCGATGGTTATCATGCACACAACTTCCTACATCACCAAATTCATCTCTTGTCTGTTGA 1521 0.4412 MAVAERGSSSEGSTSFNCYKVANLTETILNAKQTSNLKDRYILGEQLGWGQFGVIRTCSDKTTGEVLACKSIAKDRLVTSDDMQSVKLEIEIMAKLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKHGRFSESEGMVLFRHLMQMVLYCHENGVVHRDLKPENILLATKSFSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADIWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPPEPWSRISESAKDLIRRMLCVESSQRLTAQEVLDHCWMESDPTNLEQLSENRVENCGEWHVGGDSFSSFMSRNNDISFGGGSPACDAQSPMFSCKSSFSSIFVEPVTPFSASGGFSFQSSGGPIGLEFSTPVSSMPSFAFLSPSSSVEQKSLIFEFDSNASEVNAIAKDSPLCLGNDVKEKDHKPIETKRACGTNCNRTLGFHSKRNRTIGLGECEQLDLVVTESVIRWLSCTQLPTSPNSSLVC 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04310 506 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04310 506 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
Vivi1g04310 506 Pfam Protein kinase domain 43 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04310 506 FunFam Calcium-dependent protein kinase 1 43 126 - -
Vivi1g04310 506 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Vivi1g04310 506 CDD STKc_CAMK 40 298 - -
Vivi1g04310 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vivi1g04310 506 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 307 - -
Vivi1g04310 506 FunFam Phosphoenolpyruvate carboxylase kinase 128 315 - -
Vivi1g04310 506 SUPERFAMILY Protein kinase-like (PK-like) 38 376 IPR011009 -
Vivi1g04310 506 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Vivi1g04310 506 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04310 Vivi-Chr1 91810509 91813871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04310 24 304 EF-hand Containing Proteins AT3G57530 48.754 1.04e-96 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vivi1g04310 Pkinase 6.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04310 - - psat:127091783 927.546