Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04292 ATGGGAAGAGGGAAGGTTGTTCTTGAGAGAATCCAGAACAAGATCAATAGACAAGTTACATTCTCAAAGAGAAGAAGTGGTTTGCTCAAGAAAGCATTCGAACTTTCTGTGTTATGTGATGCTGAAGTTGCTCTTATCATCTTCTCTGGCCTTGGCAAGCTTTTTCAATACAGTTCCTCTGACTTGAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACAATATGTCTGAGAATGGTGACTTGGAAGAACATGAGTCACAGGGTTTATACGAGGAGCTTTTGATGTTAAGAGTTAAGCATGAATCACTTGCCCAGACTCAAAGGACTTTTTTGGGAGAAGAAATCAGTGCACTAAGCATAAAAGATTTGCAGAATATAGAAAAACAACTAGAGAGAACGCTTGCACAAGCTCGAAAGCACCAAATTCAGAAACTGATGGCACGAGTTGATGAATTACGCCAAGAGGTGCACAAAGTGGAGGAGATTAATAAACAATTAGAATCCAAGGAAAGAGGTTTAAGCACCAATGTTTGTGCCTATTCTACTGATTTAACCATCTCCAACAACAACCACAACAACAATATCATTACCAATTTGCATGATGCACAAGTCAATGAGTGTGAATATAGTCAGTTTCGGCACCAACAAGCAGCGTCAAAAGGGCAGGCAACAGATACAAGGACTGATAGAGGCCAGAGCAGTCGCAACAAGAATAATGGATGGATGAATATTTGA 741 0.3968 MGRGKVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSGLGKLFQYSSSDLNKIIEKYRQCCFNNMSENGDLEEHESQGLYEELLMLRVKHESLAQTQRTFLGEEISALSIKDLQNIEKQLERTLAQARKHQIQKLMARVDELRQEVHKVEEINKQLESKERGLSTNVCAYSTDLTISNNNHNNNIITNLHDAQVNECEYSQFRHQQAASKGQATDTRTDRGQSSRNKNNGWMNI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04292 246 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Vivi1g04292 246 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Vivi1g04292 246 MobiDBLite consensus disorder prediction 213 246 - -
Vivi1g04292 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g04292 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi1g04292 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vivi1g04292 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi1g04292 246 Coils Coil 122 171 - -
Vivi1g04292 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi1g04292 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1g04292 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1g04292 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1g04292 246 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g04292 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 195 - -
Vivi1g04292 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1g04292 246 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04292 Vivi-Chr1 91426055 91428189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04292 1 169 MADS-box Gene Family AT3G61120 50.888 7.14e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi1g04292 K-box 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04292 K09264 - gmx:100793681 279.256