Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04291 ATGGGAAGAGGGAAGGTTGTTCTTGAGAGAATCCAGAACAAGATCAATAGACAAGTTACATTCTCAAAGAGAAGAAGTGGTTTGCTCAAGAAAGCATTCGAACTTTCTGTGTTATGTGATGCTGAAGTTGCTCTTATCATCTTCTCTGGCCTTGGCAAGCTTTTTCAATACAGTTCCTCTGACTTGAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACAATATGTCTGAGAATGGTGACTTGGAAGAACATGAGTCACAGGGTTTATACGAGGAGCTTTTGATGTTAAGAGTTAAGCATGAATCACTTGCCCAGACTCAAAGGACTTTTTTGGGAGAAGAAATCAGTGCACTAAGCATAAAAGATTTGCAGAATATAGAAAAACAACTAGAGAGAACGCTTGCACAAGCTCGAAAGCACCAAATTCAGAAACTGATGGCACGAGTTGATGAATTACGCCAAGAGGTGCACAAAGTGGAGGAGATTAATAAACAATTAGAATCCAAGTCAGTTTCGGCACCAACAAGCAGCGTCAAAAGGGCAGGCAACAGATACAAGGACTGA 570 0.4035 MGRGKVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSGLGKLFQYSSSDLNKIIEKYRQCCFNNMSENGDLEEHESQGLYEELLMLRVKHESLAQTQRTFLGEEISALSIKDLQNIEKQLERTLAQARKHQIQKLMARVDELRQEVHKVEEINKQLESKSVSAPTSSVKRAGNRYKD 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04291 189 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g04291 189 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g04291 189 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Vivi1g04291 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi1g04291 189 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi1g04291 189 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1g04291 189 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1g04291 189 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1g04291 189 MobiDBLite consensus disorder prediction 168 189 - -
Vivi1g04291 189 Coils Coil 122 171 - -
Vivi1g04291 189 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi1g04291 189 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vivi1g04291 189 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1g04291 189 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Vivi1g04291 189 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 160 - -
Vivi1g04291 189 FunFam MADS-box transcription factor 1 13 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04291 Vivi-Chr1 91426055 91428239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04291 1 168 MADS-box Gene Family AT3G61120 51.190 1.49e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi1g04291 K-box 4.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04291 K09264 - gmx:100778860 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04291 1 91426055 91428239 Vivi1g04291 1 91426055 91428239 ECH