Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04281 ATGGCCGAAGATCAGAAACAGCATAAAATATCAAGTACTTTGGTCAATGATGAGAAGAAAATCATTCGTAAGGAAGTTGAGAAACAAAGGAGGATGCAAATGTCTATTCTATGCTCATCACTCAGCTCTTCACTTCCTTTTCACCTAATTAAGGGAAAGCGTTCAGTATCAGATCAAATAGGTGAGGCAGCAAATTATGTTCAATTTCTGAAGGAGAAGGTTAATGAACTTGAAGTGAAGAGGGATAAGCTCAAAGAAATTATTAGTTCAAGAATGATTGAAACTGCAAATATTGAATTATCAGCAGATCCTTCAAATATGGTGAAGTGTGTCAACATTAATCAAATTCCAGATGGGGTGGAAATTGTTATATGCCTTGGTTTCGAGGATTGCGGTTCGCGTTTATCAGATTTAATGAAAATAATAGTTCAAGAAGGATGTGATGTTGTTCACTGTGTTACCAACCATGTTAATGGGAAGATATTTCATACTATTAAATCCGAGGTGGAAGACTTGACACACTTTGATCTTGCTAGGCTGCAAAACAAACTGGATCACGCAATCTTATTGTCAAGGTAG 579 0.3644 MAEDQKQHKISSTLVNDEKKIIRKEVEKQRRMQMSILCSSLSSSLPFHLIKGKRSVSDQIGEAANYVQFLKEKVNELEVKRDKLKEIISSRMIETANIELSADPSNMVKCVNINQIPDGVEIVICLGFEDCGSRLSDLMKIIVQEGCDVVHCVTNHVNGKIFHTIKSEVEDLTHFDLARLQNKLDHAILLSR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04281 192 Coils Coil 67 87 - -
Vivi1g04281 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 88 IPR036638 GO:0046983
Vivi1g04281 192 Gene3D - 11 97 IPR036638 GO:0046983
Vivi1g04281 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 18 70 IPR011598 GO:0046983
Vivi1g04281 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04281 Vivi-Chr1 91201070 91202316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04281 16 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 36.000 4.32e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04281 - - ccaj:109790384 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04281 1 91201070 91202316 Vivi1g04281 1 91201070 91202316 ECH