Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04279 ATGTCCACGTCATCACCACCACCACCACATCCTCCTCCGCCTCAAACAAAGAACAAACAAAGTTCCTCCGTCGTAACTGGTTGCTCTTTCTTTTTCGCTCTTCTCCACTGCCTCCGCAACGAAAAACGAACTACTCCATCCTCCGACTCAGACTCCAATCCTCCTCATCCCTTCTCCTACCCCCTCCTCCGCCGCGCAACGAACTCGTTCTCCAATATCCTCGGTCATGGCGGATTCGGTCCTGTATATTCCGGTACCCTCCCCTCCTCCGGTAAACTAATCGCCGTGAAGCTCATGAACTCTATTAGTTCCTCCGTCGGCTGCCAAGGTGAACGTGAATATCACAACGAACTCTTCTTTGCCGCCAGACTCAATTCCAACCTCCTTGTCCCCGCAATCGGTTTCTCATCCGATCCAAAACGTCGCCGTTTCCTTCTCGTCTATGATCTCATGAAAAACGGTAACCTCCATGACGCGCTTTTCCGTCGTAAATACCCCGAGTTAACGCTATGGAAAACACGGTTTTCGATAATTCTCGACGTCGCGAAAGGAATTCAATATCTTCATTCTTGCGATCCGCCTATCATTCACGGTGATATTAAACCTAGTAATATTCTTCTTGATCATTCCTTTTCCGCTAAGATAGCTGATTTCGGTCTCGCGAGGTTGAAAACCGTTTCTCCTTTCGAGTTCAGAAAAGAGGAGTTTGATAGTGATGAGACAGAAATTGAGAGTGTAAACACTAGCTTTGAAGAATATGAAACAGACATGGTTGGTAGTGTTGGTGGCAGAATGAAGAAGAATGGGAGTGTAAAGGATTATGTAATGAATTGGATTGGTAAAGAAGTGAAGGAGGAAAGTTCAAAGAATGGTGAATTGTTGGATGGAAATGGAAGTGGAAAGGTAGAGAAAAGCAAGAGCAAGAAGAAAATGGAGTGGTGGGAGTCAATGGAAGAGGGAAATGGAAAGGGTGATTTGAAGAAGAAAGAGAAGAGAAGACCGGCAAGGGAGTGGTGGAAGGAAGAGTATTCTAAAGAGCTCGCCAACAAGAACAGGAAGAAAAAGAGTGGAAAAGATGGTGATAGTTGGTGGAAATGGGAGAGAGATCGCGATGATGTTGATGACGATGATGCGAAGAAGAAAAGGAATAGTAAAAACCGTAGCAGAAAGGATCGTGGTAGTGGTGATTCATGGTTGAGTGGCAGTGGTGAGTTAAGGAGAGTTAATTGGAATAGCTATGATTCATGTAATAGCGGAGAAATTCAAAAGAGTGGTGAAATCAGCAGTACAACAAGTATGCGAGGAACTGTTTTTTACGTCGCGCCTGAAAATGGTTATAGTGGTAATGATATAACAGAGAAATGTGATGTTTATAGTTTTGGGGTGTTATTGCTTGTTATTGTTTCTGGGAGGAGGCCTCTTCAGATGAATGATGATGGTGTGCATGTTTCTGAGTTTAAGAGAGCAAATTTGGTGTCTTGGGCTAGACATTGTGGACGGAATGGGAAACTACTTGAACTTGTTGATCCTTGTGTAGAGATGTTGTTAGAGGATGATAAAGAGCAGGCTCTTTTGTGCATTAGAGTTGCATTGATTTGTTTGATGAAATCGCCTAATCGTCGTCCTTCGATGAAACAAGTTGTGGGAATGCTTAGTGGGGAATTGAAACCACCTAAATTGCCACATGAGTGCTCGCAAACTCGATTCCAATTCAAGAATCGGAAAGAAAGTTTGTGA 1737 0.4381 MSTSSPPPPHPPPPQTKNKQSSSVVTGCSFFFALLHCLRNEKRTTPSSDSDSNPPHPFSYPLLRRATNSFSNILGHGGFGPVYSGTLPSSGKLIAVKLMNSISSSVGCQGEREYHNELFFAARLNSNLLVPAIGFSSDPKRRRFLLVYDLMKNGNLHDALFRRKYPELTLWKTRFSIILDVAKGIQYLHSCDPPIIHGDIKPSNILLDHSFSAKIADFGLARLKTVSPFEFRKEEFDSDETEIESVNTSFEEYETDMVGSVGGRMKKNGSVKDYVMNWIGKEVKEESSKNGELLDGNGSGKVEKSKSKKKMEWWESMEEGNGKGDLKKKEKRRPAREWWKEEYSKELANKNRKKKSGKDGDSWWKWERDRDDVDDDDAKKKRNSKNRSRKDRGSGDSWLSGSGELRRVNWNSYDSCNSGEIQKSGEISSTTSMRGTVFYVAPENGYSGNDITEKCDVYSFGVLLLVIVSGRRPLQMNDDGVHVSEFKRANLVSWARHCGRNGKLLELVDPCVEMLLEDDKEQALLCIRVALICLMKSPNRRPSMKQVVGMLSGELKPPKLPHECSQTRFQFKNRKESL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04279 578 SMART serkin_6 68 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04279 578 SUPERFAMILY Protein kinase-like (PK-like) 52 563 IPR011009 -
Vivi1g04279 578 MobiDBLite consensus disorder prediction 1 16 - -
Vivi1g04279 578 MobiDBLite consensus disorder prediction 299 331 - -
Vivi1g04279 578 MobiDBLite consensus disorder prediction 286 331 - -
Vivi1g04279 578 MobiDBLite consensus disorder prediction 373 398 - -
Vivi1g04279 578 PANTHER OS07G0586332 PROTEIN 267 576 IPR044576 -
Vivi1g04279 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vivi1g04279 578 Gene3D Transferase(Phosphotransferase) domain 1 411 565 - -
Vivi1g04279 578 ProSiteProfiles Protein kinase domain profile. 68 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04279 578 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g04279 578 Gene3D Transferase(Phosphotransferase) domain 1 59 248 - -
Vivi1g04279 578 Pfam Protein kinase domain 72 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04279 578 Pfam Protein kinase domain 426 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04279 Vivi-Chr1 91162183 91164332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04279 419 551 Receptor kinase-like Gene Family AT3G58690 33.333 6.73e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vivi1g04279 Pkinase 1.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04279 - - psat:127097028 951.044