Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04271 ATGATAATGAAGCTGATTCTCATAATAACGTTTTCTTTTGTTGTCTCAGTGATTAGATCTGAGACTGAGACTGAGAGTTTTTCACCTCTGTATATGTTGGAAAACGATGTCTTTTCAGCTCAAGTGTCTTCTTCTCAACCTGATCAATCTCTCATGGTTCCACTCACTCTTATTCAAGGAGCTGATTCTGAAGGAGCAGATCTCTTCCTTGAAGCCATGGAGACAAGAAGCTCAGAGAGAAAAAGAACTTGGAGGCAGAAAGAGGTGGTGAACAATCATGAAGAGATGGAACAGGATGATGAAGATGGAATGGATTTTGAAGAGGAGGAGGAAGGTAGAAAGAAGACGGTAGTAACAGATCTGTATAGTAAGAGTACAAGGTCCAAAGGTGGAGGGTCGAATATTCCACCTTGTTGTCAAGTGGAGAATTGTGATGCTGATCTAAGTGAAGCTAAGCAGTACCATCGGAGACATAAGGTGTGTGAGTATCATGCTAAGGCACCTGCCGTACACATTGCAGAGATGCAGCAAAGGTTTTGTTAG 543 0.4199 MIMKLILIITFSFVVSVIRSETETESFSPLYMLENDVFSAQVSSSQPDQSLMVPLTLIQGADSEGADLFLEAMETRSSERKRTWRQKEVVNNHEEMEQDDEDGMDFEEEEEGRKKTVVTDLYSKSTRSKGGGSNIPPCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIAEMQQRFC 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04271 180 SUPERFAMILY SBT domain 137 180 IPR036893 GO:0003677|GO:0005634
Vivi1g04271 180 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 83 180 IPR044817 GO:0003677
Vivi1g04271 180 Gene3D - 135 180 IPR036893 GO:0003677|GO:0005634
Vivi1g04271 180 MobiDBLite consensus disorder prediction 82 116 - -
Vivi1g04271 180 Pfam SBP domain 139 180 IPR004333 GO:0003677
Vivi1g04271 180 ProSiteProfiles Zinc finger SBP-type profile. 136 180 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04271 Vivi-Chr1 90980561 90984657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04271 129 180 SBP-box Gene Family AT2G33810 59.615 2.03e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi1g04271 SBP 4.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04271 - - vvo:131643517 326.25