Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04266 ATGGTAGAACACCGACAAGAACAAACACAAAACTTCAGAGTTAAGACAATGACGACAACCAATGGGGATGAAAACGAGAATAGTTTAGAATTGGTTGAGCCAAAAGGTTCTAGAGAGGAGAAGGAGAAGAACAGGAAGAAGAAAAAAGCGAAATCTGTTGAGTCTCTGGTAATGGAGAAGAAGGTGGAGGATCATAATGCGGTTTCGAAGTTTAAAATATCGGAGCCGTTGAGAGAGAAGTTGAAGGAAAAGGGAATCGAGTCGTTGTTTCCTATTCAGGCAATGACGTTTGATACCATTCTGCATGGGTTTGATTTGGTTGGTAGAGCTCGCACTGGTCAGGGTAAAACTCTTGCCTTTGTGTTGCCAATTATAGAATCTATAACAAACGGTCCGGCAAAAGCATCGAGAAAGACTGGTGATGGGAGGCCGCCGAGTGTTCTTGTGCTTTTACCTACGAGGGAATTGGCCTGTCAGGTGAATGCTGATTTTGAAGTTTATGGTGCGGCAATGGGATTGACTTCTTGTTGTTTGTATGGAGGAGCTTCTTATCAAGCTCAAGAGATTAAGCTTAAGAGAGGTGTGGACATTGTTATTGGTACACCGGGCCGCATAAAGGATCATTTAGAGCGGGGGAAAATTGACCTGAGCCAACTAAAGTTCCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTCTTTGAAGATGTTGAATTGATCCTTGGTAAGGTTAAAAATGTAGGTAAAGTTCAGACGCTTCTTTTTAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTAAAAAATTTCTTAAGCCAGATAAGGAAACTGCTGATCTTGTTGGAGATACAAAAATGAAGGCCAGTACCAGTGTTAGGCATATTATTCTTCCTTGTACCGGCTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCTCTTTTACAGCAGTGGAGGTCGAACAATTATATTCACGGAGACAAAGGAATCAGCATCTCAGCTCGCAGAGTTGTTGCCTGGAGCAAAAGCACTCCACGGCGACATACAGCAAGCACAACGTGAAGTTACTTTGTCTGCCTTTAGGTCTGGGAAATTCATGACATTAGTTGCGACTAATGTGGCTGCGCGGGGTCTGGATATTAACGATGTTCAGTTAATTATTCAGTGTGAACCTCCAAGGGATGTTGAAGCCTATATCCATCGTTCTGGGCGCACGGGAAGAGCAGGTAACACTGGAGTTGCTGTAATGCTTTATGATCCAAGGAGGTCGAATATATCTAAAATCGAGAGAGAGTCGGGTGTTAAATTTGAACATGTTTCTGCTCCTCAGGCTAATGATATTGCCAAAGCTATTGGCGCAGAAGCTGCAGAAATGATAACTCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCGGCTGAAGATCTTTTAAATAACTCCGGTTTATCGGTCGTTGATTTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACAGAGATCAAGAAAAGATCTCTATTAACTTCTATGGAGAACTATGTTACATTACTTCTTGAGACCGGGAGACCTATCTTTACGCCAACTTTTGCATACAAAATGTTGAGGAGGATTTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTACTATCACTGCAGATGGAAATGGTGTAGTTTTTGATGTACTAGCTGAAGATTTAGATACATATCTTGCTGGTAAGAAAAATGCCTCTGATGTAAGTTTAGAGGTGTTAAAAGCTTTGCCTCGTCTGCAACAGAGAGATCAATCAAGAGGCGGCAGATTTGGAGATGGCAGTGGTCGTGGTGGGAGAAGTGGTGGTGGTGGCGGCAGGAATGGTAGATTTTCAGGTGATAGGTTTGCGAACGGTGGTGGTAGAGGTCGTGGCAACTGGGGTGGGAAAAGATGGTGA 1941 0.4353 MVEHRQEQTQNFRVKTMTTTNGDENENSLELVEPKGSREEKEKNRKKKKAKSVESLVMEKKVEDHNAVSKFKISEPLREKLKEKGIESLFPIQAMTFDTILHGFDLVGRARTGQGKTLAFVLPIIESITNGPAKASRKTGDGRPPSVLVLLPTRELACQVNADFEVYGAAMGLTSCCLYGGASYQAQEIKLKRGVDIVIGTPGRIKDHLERGKIDLSQLKFRVLDEADEMLRMGFFEDVELILGKVKNVGKVQTLLFSATLPDWVKHIAKKFLKPDKETADLVGDTKMKASTSVRHIILPCTGSARSQLIPDIILFYSSGGRTIIFTETKESASQLAELLPGAKALHGDIQQAQREVTLSAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHVSAPQANDIAKAIGAEAAEMITQVSDSVIPAFKSAAEDLLNNSGLSVVDLLAKALAKAVGYTEIKKRSLLTSMENYVTLLLETGRPIFTPTFAYKMLRRILPEEKVEAVKGLTITADGNGVVFDVLAEDLDTYLAGKKNASDVSLEVLKALPRLQQRDQSRGGRFGDGSGRGGRSGGGGGRNGRFSGDRFANGGGRGRGNWGGKRW 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04266 646 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 37 479 - -
Vivi1g04266 646 MobiDBLite consensus disorder prediction 1 52 - -
Vivi1g04266 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 423 IPR027417 -
Vivi1g04266 646 CDD GUCT_RH7_like 507 592 - -
Vivi1g04266 646 SMART ultradead3 85 297 IPR014001 -
Vivi1g04266 646 Gene3D - 518 589 - -
Vivi1g04266 646 SMART helicmild6 334 411 IPR001650 -
Vivi1g04266 646 SUPERFAMILY RNA-binding domain, RBD 504 587 IPR035979 GO:0003676
Vivi1g04266 646 FunFam DEAD-box ATP-dependent RNA helicase 7 517 589 - -
Vivi1g04266 646 Pfam DEAD/DEAH box helicase 90 267 IPR011545 GO:0003676|GO:0005524
Vivi1g04266 646 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 279 IPR014001 -
Vivi1g04266 646 Gene3D - 30 279 IPR027417 -
Vivi1g04266 646 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 309 450 IPR001650 -
Vivi1g04266 646 MobiDBLite consensus disorder prediction 598 646 - -
Vivi1g04266 646 Pfam GUCT (NUC152) domain 500 595 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vivi1g04266 646 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 223 231 IPR000629 -
Vivi1g04266 646 MobiDBLite consensus disorder prediction 28 52 - -
Vivi1g04266 646 MobiDBLite consensus disorder prediction 11 27 - -
Vivi1g04266 646 Pfam Helicase conserved C-terminal domain 316 411 IPR001650 -
Vivi1g04266 646 CDD DEADc 77 274 - -
Vivi1g04266 646 CDD SF2_C_DEAD 294 420 - -
Vivi1g04266 646 Gene3D - 303 517 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04266 Vivi-Chr1 90965804 90970031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04266 65 417 Eukaryotic Initiation Factors Gene Family AT3G13920 29.526 1.66e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04266 K16911 - gmx:100820207 902.123