Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04261 ATGGTGGAAGAAAAAGGGTTCGTGCTCTTGCTATATGGTGCTGCGGAATACAAGTTGAGGTTTTTGATGTTTCGTACTACATTGGTGTTTCTCATGATGTTGCTTCTTTCTCCATTTGCATTTTCACTCTCCGAAGAAGGACAAGCATTAATGGCAATGAAGTCTTCGTTCAACAACATTGCTGACGTTCTTCTTGACTGGGATGATGTGCATAATGACGACTTTTGTTCATGGCGTGGAGTTTTTTGTGATAATGTCACTCTTACTCTAACAGTGGTATCTCTGAACTTATCATGTTTGAATCTTGGTGGTGAAATATCACCAGCAATTGGTGATTTAAGAAACTTGCAATCCATAGACCTGCAAGGGAATAAGCTAACTGGTCAAATCCCAGATGAAATTGGGAACTGTGGTGAACTTGTTCATCTGGATTTATCTGATAATCTGCTCTATGGTGATATACCTTTCTCCATATCGAAGCTGAAGCTACTTGAATTTTTGAATTTGAAGAACAATCAACTGACTGGTCCTATTCCTTCAACGTTATCACAAATTCCTAACCTCAAGACTATTGACCTTGCTAGAAATAAGTTCATTGGAGAGATACCGAGGCTACTCTACTGGAATGAAGTATTGCAATACCTTGGGTTGCGAGGGAACATGTTGACTGGAATCTTGTCTCCCGACATTTGTCAATTAACTGGTTTATGGTATTATGATGTCAGAGGCAATAATTTGACTGGTACAATACCTGAGAGCATTGGCAACTGTACGAGTTTTGAAATCTTTGACATATCGTATAATCAGATTACTGGGGAGATTCCGTATAATATTGGGTTTCTTCAAGTGGCTACTTTGTCACTTCAAGGAAATAGGTTAACCGGGAAGATACCAGAAGTAATTGGTTTGATGCAAGCTCTTGCAATATTGGATTTGAGTGAGAATCTCTTAGTGGGACCAATTCCTCCAATATTAGGAAATTTATCTTTCACTGGCAAACTATATCTTCATGGAAACATGCTTACTGGATCGATACCTCCCGAGCTAGGCAATATGTCAAAACTGAGCTACCTGCAATTGAATGATAATCAACTGGTGGGTGAAATTCCTAACGAGTTTGGGAAGCTTGAACATCTGTTTGAATTGAATCTTGCCAATAATCGACTAAATGGATCTATTCCTCACAACATAAGCTCCTGCACGGCCTTAAATCAGTTTAATGTGCATGGTAATCAGTTAAGCGGTTCAATTCCATTGAGCTTTCGCAACCTTGAGAGTTTGACTTACTTAAATCTCTCTGCGAACAACTTTAGAGGGATTATACCAGTTGAGTTAGGCCATATCATAAATCTTGATACACTGGACCTATCTAGCAATAATTTTTCTGGTCATGTCCCAGCATCTGTTGGTTCTCTAGAGCATCTTTTGACCCTCAACTTGAGTCGTAACCATCTAGATGGTCCCTTATCTGCTGAATTTGGGAATCTCAGAAGCATACAGATTATTGATATGTCCTTCAACAATCTGTCGGGTAGCATTCCTCCAGAGATTGGACAGCTGCAGAACCTTGCCTCTCTGATTTTGAACAACAATGACCTGCATGGGAAGATTCCAGAACAGCTATCCAATTGTTTCAGTCTTTCATCCATGAACTTTTCTTATAACAACTTTACCGGAGTAGTTCCATCTACTAAGAATTTCACTCGGTTCCCGGCTGACAGCTTCCTTGGAAATCCTTTACTGTGTGGAAATTGGGTGGGATCTATATGCCGTCCTTATGTCCCGAAATCAAGAGAGATTTTTTCTAGAGTTGCAGTTGCATGTCTCACTCTTGGTATCATCGTGTTAGTGGCTATGGTTATTATTGCTATCTATAGAACCATCCAATCGAAGCAGTTGTTAAAAGCATCTAGCATGGCCGATCAAGTGCCTCCCAAGCTTGTGGTTCTTCATATGGACTTGGCTATACACACTTTGGATGATATAATGAGAAGCACTGAAAATCTCAGCGAGAAATTTATCATAGGTTATGGTGCCTCCAGTACTGTATACAAGTGTGTGTTGAAAAATTCTCGACCGATTGCAGTCAAGCGATTGTACAATCAGCATCCACACAATTTAAGGGAATTTGAAACGGAACTTGTCACAATAGGCAGCATTAGGCATAGAAATCTTGTCGTCTTGCATGGCTACGCCCTTACTCCTTATGCAAATCTACTTTTTTATGAGTACATGGCGAATGGCTCTCTGTGGGATCTTCTACATGGTCCGCTGAAGGTAAAACTTGATTGGGAAACACGGATGAGGATTGCTGTTGGAGCTGCTGAAGGACTTGCTTATCTTCACCATGATTGCAACCCTCGAATTGTTCACAGGGACATCAAGTCTTCAAATATTTTGCTGGATGAAAACTTTGAGGCTCACCTATCTGATTTTGGCACTGCAAAATGCATCCCAGTCACCAAAACTCATGCCTCAACTTATGTCCTTGGAACTATAGGCTATATTGATCCTGAATATGCACGAACGTCTCGGCTGAATGAGAAATCAGATGTTTATAGCTTTGGCATTGTTCTTCTAGAGCTACTCACTGGGAAGAAGGCAGTGGATAATGATTCCAATTTGCACCAATTGATATTGTCCAAGGCTGATAACAATACTGTCATGGAGGCTGTGGATCCTGAGGTATCCGTTACCTGCGTTGATTTAGCTCATGTCAAGAAGACCTTTCAACTTGCTTTGCTATGCACGAAAAAGAACCCTTCTGAGAGGCCTACCATGCACGAAGTAACCAGGGTGCTCATTTCACTTCTTCCTGCACCTCCAAGTAAAGTCATTGCAGCTATGGGGAAGAGTTTTGACTATGCTCCTTTCGTGGTCGATAAGGGTGAGCACCCCCGAAAATTGGATGGACTACAACCTCAGCGCGATAACAATTCTTCTAATGCTCAATGGTTTGTTCGTTTCGGAGATGCTATATCCAAGAGCTCCCTCTGA 2997 0.4111 MVEEKGFVLLLYGAAEYKLRFLMFRTTLVFLMMLLLSPFAFSLSEEGQALMAMKSSFNNIADVLLDWDDVHNDDFCSWRGVFCDNVTLTLTVVSLNLSCLNLGGEISPAIGDLRNLQSIDLQGNKLTGQIPDEIGNCGELVHLDLSDNLLYGDIPFSISKLKLLEFLNLKNNQLTGPIPSTLSQIPNLKTIDLARNKFIGEIPRLLYWNEVLQYLGLRGNMLTGILSPDICQLTGLWYYDVRGNNLTGTIPESIGNCTSFEIFDISYNQITGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENLLVGPIPPILGNLSFTGKLYLHGNMLTGSIPPELGNMSKLSYLQLNDNQLVGEIPNEFGKLEHLFELNLANNRLNGSIPHNISSCTALNQFNVHGNQLSGSIPLSFRNLESLTYLNLSANNFRGIIPVELGHIINLDTLDLSSNNFSGHVPASVGSLEHLLTLNLSRNHLDGPLSAEFGNLRSIQIIDMSFNNLSGSIPPEIGQLQNLASLILNNNDLHGKIPEQLSNCFSLSSMNFSYNNFTGVVPSTKNFTRFPADSFLGNPLLCGNWVGSICRPYVPKSREIFSRVAVACLTLGIIVLVAMVIIAIYRTIQSKQLLKASSMADQVPPKLVVLHMDLAIHTLDDIMRSTENLSEKFIIGYGASSTVYKCVLKNSRPIAVKRLYNQHPHNLREFETELVTIGSIRHRNLVVLHGYALTPYANLLFYEYMANGSLWDLLHGPLKVKLDWETRMRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKCIPVTKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHQLILSKADNNTVMEAVDPEVSVTCVDLAHVKKTFQLALLCTKKNPSERPTMHEVTRVLISLLPAPPSKVIAAMGKSFDYAPFVVDKGEHPRKLDGLQPQRDNNSSNAQWFVRFGDAISKSSL 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04261 998 Pfam Leucine rich repeat 450 509 IPR001611 GO:0005515
Vivi1g04261 998 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 184 935 - -
Vivi1g04261 998 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 320 593 - -
Vivi1g04261 998 Gene3D Ribonuclease Inhibitor 43 208 IPR032675 -
Vivi1g04261 998 Gene3D Ribonuclease Inhibitor 466 592 IPR032675 -
Vivi1g04261 998 Gene3D Ribonuclease Inhibitor 283 368 IPR032675 -
Vivi1g04261 998 Gene3D Ribonuclease Inhibitor 369 465 IPR032675 -
Vivi1g04261 998 Pfam Protein kinase domain 673 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04261 998 SUPERFAMILY Protein kinase-like (PK-like) 652 934 IPR011009 -
Vivi1g04261 998 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Vivi1g04261 998 Gene3D Ribonuclease Inhibitor 209 282 IPR032675 -
Vivi1g04261 998 SMART LRR_typ_2 472 495 IPR003591 -
Vivi1g04261 998 SMART LRR_typ_2 520 544 IPR003591 -
Vivi1g04261 998 SMART LRR_typ_2 113 137 IPR003591 -
Vivi1g04261 998 SMART LRR_typ_2 424 447 IPR003591 -
Vivi1g04261 998 SMART LRR_typ_2 376 400 IPR003591 -
Vivi1g04261 998 SMART LRR_typ_2 352 375 IPR003591 -
Vivi1g04261 998 SMART LRR_typ_2 161 185 IPR003591 -
Vivi1g04261 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Vivi1g04261 998 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 210 319 - -
Vivi1g04261 998 ProSiteProfiles Protein kinase domain profile. 669 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04261 998 SUPERFAMILY L domain-like 73 281 - -
Vivi1g04261 998 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 745 944 - -
Vivi1g04261 998 Gene3D Transferase(Phosphotransferase) domain 1 745 943 - -
Vivi1g04261 998 Pfam Leucine Rich Repeat 115 137 IPR001611 GO:0005515
Vivi1g04261 998 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 640 744 - -
Vivi1g04261 998 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 43 209 - -
Vivi1g04261 998 SMART serkin_6 669 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04261 998 Pfam Leucine Rich repeats (2 copies) 164 203 IPR025875 -
Vivi1g04261 998 Gene3D Phosphorylase Kinase; domain 1 630 744 - -
Vivi1g04261 998 Pfam Leucine rich repeat N-terminal domain 44 84 IPR013210 -
Vivi1g04261 998 SUPERFAMILY RNI-like 226 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04261 Vivi-Chr1 90745747 90753103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04261 115 998 Receptor kinase-like Gene Family AT5G07180 76.045 0.0 1355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vivi1g04261 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04261 K20718 - gmx:100811653 1669.44