Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04259 ATGGCCTCTAAAATGGAAAGCGATAGTCCAACAGATACCCCACCTTCACCGCCAAAAAATATATACAAGGATCCAGATGATGGGAGGCAGAGGTTTTTGCTTGAGCTGGAATTTGTTCAATGCCTTGCTAATCCTACCTACATCCACTATTTGGCTCAGAACCGAAATTTTGAGGATGAAGCATTCATTGGGTACTTAAAGTATCTTCAATATTGGAATCGCCCTGAATATATTAAATTTATCATGTATCCTCACTGCCTCTATTTTCTCGAGCTTCTTCAAAATGCAAATTTTCGCAATGCAATGGCACATCCTGTCAATAAGGAATTGACGCATAGGCAGCAGTTCTATTTCTGGAAGAACTATAGGAACAATCGGCTAAAACACATTTTACCAAAACCACTTCCAGAACCTAGTGCTGCACTTCCTGCTTCAACTCAACCTCAGCCACCTGTGCCTGCACTACCACCAGCACCTGCTACGAACGTTGCTGTGACAGCATCTTCTACTCAAGCTCCTTCTCCAATGCCATATGGTGTCCCTTCTGGTTCTAGTCTTGCAAAAAATGACATGAGGAATCCTACAGTTGATAAAAGGAAAAGAAAGTGA 609 0.4204 MASKMESDSPTDTPPSPPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRNFEDEAFIGYLKYLQYWNRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPVNKELTHRQQFYFWKNYRNNRLKHILPKPLPEPSAALPASTQPQPPVPALPPAPATNVAVTASSTQAPSPMPYGVPSGSSLAKNDMRNPTVDKRKRK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04259 202 MobiDBLite consensus disorder prediction 138 158 - -
Vivi1g04259 202 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Vivi1g04259 202 MobiDBLite consensus disorder prediction 162 178 - -
Vivi1g04259 202 FunFam Mediator of RNA polymerase II transcription subunit 31 18 119 - -
Vivi1g04259 202 MobiDBLite consensus disorder prediction 138 202 - -
Vivi1g04259 202 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 2 202 IPR008831 GO:0003712|GO:0006355|GO:0016592
Vivi1g04259 202 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g04259 202 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 18 119 IPR038089 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Vivi1g04259 Med31 3.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04259 K15153 - gmx:100527879 325.865